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Report for CCDS19874.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19874.1 Public Mus musculus 5 Mtif3 23 108 98 CCDS HistoryNCBI Gene:76366Re-query CCDS DB by CCDS ID:19874.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19874.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016654.8 ENSMUSP00000016654.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016654.8Link to Ensembl Protein Viewer:ENSMUSP00000016654.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000016654Re-query CCDS DB by Protein ID:ENSMUSP00000016654
Original member Current member EBI ENSMUST00000066675.9 ENSMUSP00000063398.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066675.9Link to Ensembl Protein Viewer:ENSMUSP00000063398.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000066675Re-query CCDS DB by Protein ID:ENSMUSP00000063398
Original member Current member EBI ENSMUST00000110564.7 ENSMUSP00000106193.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110564.7Link to Ensembl Protein Viewer:ENSMUSP00000106193.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110564Re-query CCDS DB by Protein ID:ENSMUSP00000106193
Original member Current member EBI ENSMUST00000110566.1 ENSMUSP00000106195.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110566.1Link to Ensembl Protein Viewer:ENSMUSP00000106195.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110566Re-query CCDS DB by Protein ID:ENSMUSP00000106195
Original member Current member NCBI NM_001256100.1 NP_001243029.1 Accepted alive Link to Nucleotide Sequence:NM_001256100.1Link to Protein Sequence:NP_001243029.1Re-query CCDS DB by Nucleotide ID:NM_001256100Re-query CCDS DB by Protein ID:NP_001243029Link to BLAST:NP_001243029.1
Original member Current member NCBI NM_001256101.1 NP_001243030.1 Accepted alive Link to Nucleotide Sequence:NM_001256101.1Link to Protein Sequence:NP_001243030.1Re-query CCDS DB by Nucleotide ID:NM_001256101Re-query CCDS DB by Protein ID:NP_001243030Link to BLAST:NP_001243030.1
Original member Current member NCBI NM_001256102.1 NP_001243031.1 Accepted alive Link to Nucleotide Sequence:NM_001256102.1Link to Protein Sequence:NP_001243031.1Re-query CCDS DB by Nucleotide ID:NM_001256102Re-query CCDS DB by Protein ID:NP_001243031Link to BLAST:NP_001243031.1
Original member Current member NCBI NM_001359467.1 NP_001346396.1 Accepted alive Link to Nucleotide Sequence:NM_001359467.1Link to Protein Sequence:NP_001346396.1Re-query CCDS DB by Nucleotide ID:NM_001359467Re-query CCDS DB by Protein ID:NP_001346396Link to BLAST:NP_001346396.1
Original member Current member NCBI NM_029581.4 NP_083857.1 Accepted alive Link to Nucleotide Sequence:NM_029581.4Link to Protein Sequence:NP_083857.1Re-query CCDS DB by Nucleotide ID:NM_029581Re-query CCDS DB by Protein ID:NP_083857Link to BLAST:NP_083857.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243029.1 276 Q9CZD5 276 100% 0 0
NP_001243030.1 276 Q9CZD5 276 100% 0 0
NP_001243031.1 276 Q9CZD5 276 100% 0 0
NP_001346396.1 276 Q9CZD5 276 100% 0 0
NP_083857.1 276 Q9CZD5 276 100% 0 0

Chromosomal Locations for CCDS 19874.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 146955594 146955815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146956787 146956944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146958825 146959275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (831 nt):
ATGGCTGTTCTTCTGATGAGGTTGATGCTACAAACTACAAAGCTTGACCATAACTTAATTGGAAGATGTT
TGCAAAGACACGCTGTGAAGCCAGATCCAGCACAGCTGTCCCTGTCTGCGTCCACCCCAAAGCTGTTGTA
CCTGACTTCTGCAAAAGGTTTTAGTACTGCTGGAGACCCACAGGGTGAGAGGAAACAGAAAAGAAGGGAT
GCTTTCTCTAACACCGGCCGGAAGATTAGTGAGCGGATTATCCGCGTCCTGGATGAGAAGGGCATGGACC
TGGGGATGATGCATCGAGCAGATGTGATCAGACTCATGAACAAGCAGGACCTGAGGCTGGTGCAGAGGAA
CACCAGCTCAGAGCCACCGGAGTACCAGCTTATGACCGGAGAGCAGATCCACCAGGAGCGGCTAAAGCTC
CGGGAACAGGAAAAGGCCAAACCCAAAACTGGACCAACTATGACGAAAGAGCTCGTTTTCTCTTCAAATA
TTGGACAGCACGATTTAGACACCAAGAGTAAACAGATCCAGCAGTGGATAGAGAAGAAATACCACGTTCA
AGTCACGATAAAGAGGAGGAAAGATGCGGAGCAGTCAGAGGAGGAAACGGAGGAGATATTTAACCAGATT
CTCCAGACTATGCCTGACATAGCAACCTTCTCAAGCAGACCAAAAGCCATCAGAGGAGGGACTGCTTCCA
TGTGTGTTTTTCGTCACTTGAGCAAGAAAGAAGAAAAGGCGTACAGAGAATCCCAGGAGAGCCAGAGAAG
AGACACTTTGAGCAAAGACGACGACGGAAACAGCAAAGAGTCGGATGTTGTGTGTCAGTGA

Translation (276 aa):
MAVLLMRLMLQTTKLDHNLIGRCLQRHAVKPDPAQLSLSASTPKLLYLTSAKGFSTAGDPQGERKQKRRD
AFSNTGRKISERIIRVLDEKGMDLGMMHRADVIRLMNKQDLRLVQRNTSSEPPEYQLMTGEQIHQERLKL
REQEKAKPKTGPTMTKELVFSSNIGQHDLDTKSKQIQQWIEKKYHVQVTIKRRKDAEQSEEETEEIFNQI
LQTMPDIATFSSRPKAIRGGTASMCVFRHLSKKEEKAYRESQESQRRDTLSKDDDGNSKESDVVCQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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