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Report for CCDS19951.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19951.1 Public Mus musculus 6 Gcc1 23 108 98 CCDS HistoryNCBI Gene:74375Re-query CCDS DB by CCDS ID:19951.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19951.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064377.6 ENSMUSP00000067395.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064377.6Link to Ensembl Protein Viewer:ENSMUSP00000067395.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000064377Re-query CCDS DB by Protein ID:ENSMUSP00000067395
Original member Current member EBI ENSMUST00000090511.3 ENSMUSP00000087997.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090511.3Link to Ensembl Protein Viewer:ENSMUSP00000087997.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000090511Re-query CCDS DB by Protein ID:ENSMUSP00000087997
Original member NCBI NM_028900.4 NP_083176.3 Updated not alive Link to Nucleotide Sequence:NM_028900.4Link to Protein Sequence:NP_083176.3Re-query CCDS DB by Nucleotide ID:NM_028900Re-query CCDS DB by Protein ID:NP_083176
Current member NCBI NM_028900.5 NP_083176.3 Accepted alive Link to Nucleotide Sequence:NM_028900.5Link to Protein Sequence:NP_083176.3Re-query CCDS DB by Nucleotide ID:NM_028900Re-query CCDS DB by Protein ID:NP_083176Link to BLAST:NP_083176.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083176.3 778 Q9D4H2 778 100% 0 0

Chromosomal Locations for CCDS 19951.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 28417996 28419300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28420285 28421316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2337 nt):
ATGGAGAAGTTTGGGATGAATTTCGGGGGCGGCCCAAGTAAGAAGGATCTCTTGGAGACCATCGAGACAC
AGAAAAAGCAGCTTCTCCAGTACCAGGCAAGACTCAAGGATGTGGTGCGTGCCTATAAAAGCCTGCTGAA
GGAGAAAGAAGCCCTGGAGGCCAGCATCAAGGTACTGTCGGTATCCCACGAGGCGGATGTAGGCCTCTCA
GGTGTGCAGCCTCCAGGTCTCACGTTTCCTGATTCTGTGGATGACCGGTGCTCCACTCACAGTGAGGACA
GCACCGGAACTGCCACTAGCTTGGATACCGCAGCCAGTCTTACAAGTGTCAAGGGTGAATTTGGGGTTGA
AGATGACAGAGCGGCCCGTGGACCACTTCCCCCAAAGTCTGAAGAGGCCAGTGGGTCAGAGAGTGGCGTT
AGTAGTAGCAGTGGGGATGGGCCATCTGCCGGTAGTGAGATGGACAAAAGAGTGCATCAGCTGAAGACTC
AGTTGGCCACTTTGACTAGCTCCTTGGCGACAGTCACTCAGGAAAAGTCCCGTATGGAGGCGTCTTACCT
GGCGGATAAGAAGAAGATGAAGCAGGACTTAGAGGATGCCAATAAAAAGGCAGAGGAAGAGCGGGGTCGC
CTGGAGGGAGACTTGAAGGTGCTGCAAGAGCAGATAGCAGAAACCAAAGCCCGCCTCATTACACAGCAGC
ACGATCGTGCCCAGGAGCAGAGTGACCATGCCTTGATGCTGCGCGAGCTTCAGAAGCTCTTGCAGGAGGA
GAGGACCCAGCGCCAGGACCTGGAACTTCGCTTAGAAGAGACCAGAGAAGCCTTGGCAGGGCGGGCATAT
GCCGCTGATCAGGTCGAAGGGTTTGAACTGCAGACCAAGCAGCTGACCCGAGAGGTAGAGGAGCTGAAAG
GTGAGCTGCAAACCATTCGAGATGAGAAGAACCGACCAGACCCCCGGCTGCAGGAGCTTCAGCAAGAGGC
TGCCCGTCTTAAAAGCCATTTCCAGGCCCAATTGCAGCAAGAAATGAGGAAGACAGCCCTTGCAGAGGAC
CAGCTCCGCCAGCAGTCTCAGGTAGAAGAGCAGAGAGTAGCAGCCCTGGAGAGCCAGATCTCTGAGGTAT
CTGAACTGCTGGGCACCTACGAGAAAGCCAAGCAGAAAGACCAGCTGGCCATCCAGAAGCTGAAGGAGCG
ACTTCTGCAGCTGGACCTGGAGAACAAGACACTGGCCCTCGCAGCCTCTAGCCGGTCCTCCCTTGACATC
CATGGCGACGAATCCAGTCTGGATATCAATGTCTTGAAGGACAAGATGGAGAAGCTCAAGAAGCTACTAC
AGGTTGCAGCTAGGAAAAGCCAGGTGACCCTGGATGTGGAGAAGCTCTGCGACCCTGAGATAATGGCCAA
CTCCGAGGCTGCTGACGGGGAAAAGGCTACCGCGCTCTACTACCAACAGGAGCTGAAGCAGCTGAAGGAA
GAGTTTGAGCGGTATAAGATGCGAGCCCAAGTTGTGCTCAAAAGCAAGAACACCAAAGATGGGAGCCTGG
GGAAGGAGCTGGAGGCAGCACAGGAGCAGCTCGCAGAGCTGAAGGACAAGTATATCTCCCTGCGGCTGTC
CTGTGAGGAGCTGGAAAGCCAGCACCAGCAGGAGGCTGAGGACTGGAAGCAGGAACTGGCCCGGCTGCAG
CAGCTCCATCGGCAGGAACTGGAGCGCAGCCAGCTGGACTTCAGGGACCGCACACTGAAACTGGAGGAGG
AGCTACACAAGCAGCGGGACCGGGCCCTGGCTGTGCTCGCGGAGAAGGACTTGGAGCTGGAGCAACTACG
TTCTGTGGCCTTGTCCTCTGGGTTGCCAGGACGCAGAAGCCCCGTGGGAGGAGTGGGTGGTGGAGGTCTT
GGGGACCCAGCCGACACAGCCTCCTCAGATAGCTTGACCCAGGCCCTGCAGCTTGCTGCAGCCAACGAGC
CCACCTTCTTTCTTTATGCTGAGCAGTTGGCCCGCAAGGAGGTGGAGATCACATCTCTGAGGAAGCAGAA
ACACAGGCTGGAGGTAGAAGCCCATCAGCTGCAGGAAAGGCTGCTGGAGGAGGGCGAGCGGCATCGAGAG
GAGGTTGGAGCCCTCCAGAGCCACATCGAAAAGAATATGAGGGACCAGAGCAGGGAGGGAGCCAACCTGG
AATATCTCAAAAACATCATCTACCGCTTCCTGACCCTGCCCGACAGCCTGGGCCGCCAGCAGACGCTCAC
CGCCATCCTCACGATCTTGCACTTCAGTCCTGAAGAGAAACAAGTGCTAATGCGGCTCCCAAGCGGTGGG
AGCTGGTGGCCTTCCGGCAAGAGATGA

Translation (778 aa):
MEKFGMNFGGGPSKKDLLETIETQKKQLLQYQARLKDVVRAYKSLLKEKEALEASIKVLSVSHEADVGLS
GVQPPGLTFPDSVDDRCSTHSEDSTGTATSLDTAASLTSVKGEFGVEDDRAARGPLPPKSEEASGSESGV
SSSSGDGPSAGSEMDKRVHQLKTQLATLTSSLATVTQEKSRMEASYLADKKKMKQDLEDANKKAEEERGR
LEGDLKVLQEQIAETKARLITQQHDRAQEQSDHALMLRELQKLLQEERTQRQDLELRLEETREALAGRAY
AADQVEGFELQTKQLTREVEELKGELQTIRDEKNRPDPRLQELQQEAARLKSHFQAQLQQEMRKTALAED
QLRQQSQVEEQRVAALESQISEVSELLGTYEKAKQKDQLAIQKLKERLLQLDLENKTLALAASSRSSLDI
HGDESSLDINVLKDKMEKLKKLLQVAARKSQVTLDVEKLCDPEIMANSEAADGEKATALYYQQELKQLKE
EFERYKMRAQVVLKSKNTKDGSLGKELEAAQEQLAELKDKYISLRLSCEELESQHQQEAEDWKQELARLQ
QLHRQELERSQLDFRDRTLKLEEELHKQRDRALAVLAEKDLELEQLRSVALSSGLPGRRSPVGGVGGGGL
GDPADTASSDSLTQALQLAAANEPTFFLYAEQLARKEVEITSLRKQKHRLEVEAHQLQERLLEEGERHRE
EVGALQSHIEKNMRDQSREGANLEYLKNIIYRFLTLPDSLGRQQTLTAILTILHFSPEEKQVLMRLPSGG
SWWPSGKR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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