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Report for CCDS15794.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15794.1 Public Mus musculus 2 Kcnt1 23 108 98 CCDS HistoryNCBI Gene:227632Re-query CCDS DB by CCDS ID:15794.1Re-query CCDS DB by GeneID:227632See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15794.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037580.12 ENSMUSP00000039058.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037580.12Link to Ensembl Protein Viewer:ENSMUSP00000039058.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000037580Re-query CCDS DB by Protein ID:ENSMUSP00000039058
Original member NCBI NM_175462.4 NP_780671.2 Updated not alive Link to Nucleotide Sequence:NM_175462.4Link to Protein Sequence:NP_780671.2Re-query CCDS DB by Nucleotide ID:NM_175462Re-query CCDS DB by Protein ID:NP_780671
Current member NCBI NM_175462.5 NP_780671.2 Accepted alive Link to Nucleotide Sequence:NM_175462.5Link to Protein Sequence:NP_780671.2Re-query CCDS DB by Nucleotide ID:NM_175462Re-query CCDS DB by Protein ID:NP_780671Link to BLAST:NP_780671.2

Chromosomal Locations for CCDS 15794.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25877881 25878035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25882196 25882237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25888069 25888148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25888759 25888858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25890849 25890905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25891191 25891239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25892058 25892117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25892334 25892408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25892474 25892557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25893129 25893223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25894282 25894462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25898271 25898435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25898699 25898835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25900223 25900286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25900372 25900480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25900889 25900997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25901209 25901358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25901752 25901990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25903359 25903593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25905273 25905378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25906663 25906835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25907275 25907346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25907516 25907650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25908045 25908156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25909205 25909306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25909594 25909677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25909814 25909936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25910266 25910286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25911026 25911356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25912655 25912717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25915779 25915866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25915997 25916117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3717 nt):
ATGGCGCGGGCCAAGCTGCCGCGCTCGCCGTCCGAGGGCAAGGCGGGTCCGGGGGACACCCCAGCCGGCG
CTGCAGCCCCTGAGGAGCCACACGGGCTCAGCCCGCTACTGCCGGCCCGCGGCGGGGGCTCCGTGGGCAG
CGACGTGGGCCAGAGGCTTCATGTGGAAGATTTCAGCCTGGACTCTTCCCTTTCTCAGGTCCAGGTGGAG
TTCTATGTCAATGAGAACACCTTCAAAGAGCGGCTCAAGCTGTTCTTCATCAAAAACCAAAGATCCAGCC
TGAGGATCCGGCTGTTCAACTTCTCCCTCAAGCTCCTCACCTGCCTGCTGTATATCGTCCGTGTCCTGCT
TGACAACCCAGACCAGGGCATCGGATGCTGGGGCTGCACGAAGTATAACTACACTTTCAATGGCTCATCC
TCTGAGTTCCACTGGGCTCCCATCCTGTGGGTGGAGAGGAAAATGGCTCTGTGGGTGATCCAGGTCATTG
TGGCCACAATAAGCTTCTTAGAGACCATGCTCATCATTTACCTCAGCTACAAAGGCAACATCTGGGAGCA
GATATTCCATGTGTCTTTCGTCTTGGAGATGATCAACACACTGCCCTTCATCATCACGGTCTTCTGGCCA
CCTCTGCGGAACCTGTTCATCCCCGTGTTTCTCAACTGCTGGCTGGCCAAGCATGCGCTGGAGAACATGA
TTAATGACTTCCACCGTGCCATCCTACGCACACAGTCAGCCATGTTCAACCAGGTGCTCATCCTGTTCTG
CACCCTGCTGTGCCTGGTCTTCACAGGGACCTGTGGGATCCAGCACCTGGAGCGAGCAGGTGGCAACTTG
AACCTGCTGACCTCCTTCTACTTCTGCATCGTGACTTTCTCAACTGTGGGCTTCGGTGATGTGACGCCCA
AGATCTGGCCATCCCAGCTCCTGGTGGTCATCCTGATCTGTGTCACCCTTGTGGTGCTCCCACTGCAATT
TGAAGAGCTTGTCTACCTCTGGATGGAGCGTCAGAAGTCAGGGGGCAACTATAGCCGCCACCGAGCACGG
ACGGAGAAGCACGTAGTCCTGTGTGTGAGCTCCCTCAAGATTGATCTCCTCATGGACTTCCTGAATGAGT
TCTATGCCCATCCCCGGCTCCAGGACTACTACGTGGTCATCCTGTGTCCCTCTGAAATGGACGTCCAGGT
GCGCAGGGTGCTGCAGATTCCCCTGTGGTCCCAGCGGGTCATCTACCTCCAGGGCTCTGCCCTCAAGGAC
CAGGATCTCATGCGAGCCAAGATGGACAACGGAGAGGCCTGCTTTATCCTCAGCAGCAGGAATGAGGTGG
ACCGCACAGCTGCGGATCACCAGACCATCCTTCGAGCCTGGGCTGTGAAGGACTTTGCCCCCAACTGTCC
CCTCTATGTCCAGATCCTCAAGCCCGAAAACAAGTTTCACGTCAAATTTGCTGACCACGTGGTATGCGAG
GAAGAGTGCAAGTACGCCATGCTGGCCCTGAACTGCATCTGCCCGGCCACCTCCACCCTCATCACCCTGC
TGGTGCACACGTCCCGTGGCCAGGAAGGACAGGAGTCTCCCGAGCAGTGGCAGCGCACGTACGGGAGGTG
CTCGGGCAACGAGGTGTACCACATTCGCATGGGTGACAGTAAATTCTTCCGGGAGTATGAGGGCAAGAGC
TTCACCTACGCAGCCTTCCACGCGCACAAGAAATATGGGGTGTGCCTCATCGGGCTGAAGCGTGAGGAGA
ACAAGAGTATCCTGCTGAACCCAGGACCACGGCACATCCTGGCTGCCTCCGACACCTGCTTCTATATCAA
TATTACCAAGGAGGAGAACTCAGCTTTCATCTTCAAACAGGAGGAGAAGCAGAAGAGACGGGGCCTTGCA
GGGCAGGCACTATATGAAGGGCCCTCCCGGCTCCCAGTGCATAGCATCATCGCCTCTATGGGGACAGTGG
CCATGGACCTGCAGAACACAGATTGCCGGCCCTCCCAGGGTGGCAGTGGCGGGGACGGCACAAAGCTGAC
TCTGCCCACCGAGAACGGCTCTGGTAGTCGACGCCCCAGCATCGCACCCGTTCTGGAGTTGGCAGACAGC
TCAGCCCTGTTGCCCTGCGACCTGCTGAGTGACCAGTCAGAGGATGAGGTGACACCCTCGGACGACGAGG
GGCTCTCTGTGGTTGAGTACGTGAAGGGCTATCCCCCCAACTCACCCTACATTGGCAGCTCCCCGACTTT
ATGCCACCTCCTGCCTGTGAAAGCCCCCTTCTGCTGCCTGCGGTTGGACAAGGGCTGCAAACACAACAGC
TACGAGGATGCCAAGGCCTATGGGTTCAAGAACAAGCTGATTATTGTCTCTGCTGAGACGGCAGGCAACG
GGCTCTACAACTTCATCGTGCCTCTGCGCGCCTACTACCGGTCCCGCCGGGAGCTCAACCCTATCGTGTT
GCTGCTTGACAACAAGCCTGACCACCACTTCCTGGAGGCCATCTGTTGCTTCCCCATGGTCTACTACATG
GAGGGATCCGTGGACAACCTGGACAGCTTACTGCAGTGTGGCATCATCTATGCTGACAACCTGGTGGTGG
TGGACAAGGAGAGCACTATGAGCGCTGAAGAGGACTACATGGCAGATGCCAAGACCATCGTCAATGTGCA
AACCATGTTCCGGCTTTTCCCCAGTCTCAGCATCACCACGGAGCTCACACACCCTTCCAACATGCGGTTC
ATGCAGTTCCGTGCCAAGGACAGCTACTCTCTGGCTCTTTCCAAACTTGAAAAGCAAGAACGGGAGAACG
GCTCCAACCTGGCCTTCATGTTCCGCCTGCCATTTGCTGCTGGTCGAGTATTTAGTATCAGCATGTTGGA
TACACTGCTCTACCAGTCCTTCGTGAAGGACTACATGATCACCATCACCAGGCTGCTCTTGGGCCTTGAT
ACTACACCAGGCTCCGGCTACCTCTGTGCAATGAAGGTAACCGAGGACGACCTGTGGATCCGCACTTACG
GCCGCCTCTTCCAGAAACTCTGCTCCTCCAGCGCCGAGATCCCCATCGGCATCTACAGGACCGAGTGCCA
TGTCTTCTCGGAGCCCCATGACGTCAGAGCCCAGTCTCAGATCTCGGTGAACATGGAGGACTGCGAGGAT
ACTCGGGAGGCCAAGGGACCCTGGGGCACACGAGCTGCATCTGGCAGTGGCAGCACCCATGGCCGTCACG
GGGGCAGTGCTGACCCAGTGGAGCACCCACTACTACGTCGCAAGAGCCTGCAGTGGGCCCGCAAGCTGAG
TCGCAAGAGCACCAAGCAGGCAGGGAAGGCACCTGTGGCCACAGACTGGATCACCCAGCAGCGGCTCAGC
CTGTACCGACGCTCAGAGCGCCAGGAGCTCTCAGAGCTGGTCAAGAACCGAATGAAGCACCTGGGACTGC
CCACCACTGGCTATGAGGACGTAGCAAATTTAACAGCCAGTGATGTGATGAATCGGGTAAACCTGGGATA
TTTGCAAGATGAGATGAACGATCATCACCAGAACACCCTTTCCTATGTACTCATCAACCCCCCGCCAGAC
ACAAGACTGGAACCCAACGACATTGTGTACCTCATCCGTTCCGACCCCCTGGCCCATGTGGCCAGCAGCT
CCCAGAGTCGGAAAAGCAGCTGCAGCAACAAGCTCTCATCCTGTAATCCTGAGACCAGGGATGAGACCCA
GCTCTGA

Translation (1238 aa):
MARAKLPRSPSEGKAGPGDTPAGAAAPEEPHGLSPLLPARGGGSVGSDVGQRLHVEDFSLDSSLSQVQVE
FYVNENTFKERLKLFFIKNQRSSLRIRLFNFSLKLLTCLLYIVRVLLDNPDQGIGCWGCTKYNYTFNGSS
SEFHWAPILWVERKMALWVIQVIVATISFLETMLIIYLSYKGNIWEQIFHVSFVLEMINTLPFIITVFWP
PLRNLFIPVFLNCWLAKHALENMINDFHRAILRTQSAMFNQVLILFCTLLCLVFTGTCGIQHLERAGGNL
NLLTSFYFCIVTFSTVGFGDVTPKIWPSQLLVVILICVTLVVLPLQFEELVYLWMERQKSGGNYSRHRAR
TEKHVVLCVSSLKIDLLMDFLNEFYAHPRLQDYYVVILCPSEMDVQVRRVLQIPLWSQRVIYLQGSALKD
QDLMRAKMDNGEACFILSSRNEVDRTAADHQTILRAWAVKDFAPNCPLYVQILKPENKFHVKFADHVVCE
EECKYAMLALNCICPATSTLITLLVHTSRGQEGQESPEQWQRTYGRCSGNEVYHIRMGDSKFFREYEGKS
FTYAAFHAHKKYGVCLIGLKREENKSILLNPGPRHILAASDTCFYINITKEENSAFIFKQEEKQKRRGLA
GQALYEGPSRLPVHSIIASMGTVAMDLQNTDCRPSQGGSGGDGTKLTLPTENGSGSRRPSIAPVLELADS
SALLPCDLLSDQSEDEVTPSDDEGLSVVEYVKGYPPNSPYIGSSPTLCHLLPVKAPFCCLRLDKGCKHNS
YEDAKAYGFKNKLIIVSAETAGNGLYNFIVPLRAYYRSRRELNPIVLLLDNKPDHHFLEAICCFPMVYYM
EGSVDNLDSLLQCGIIYADNLVVVDKESTMSAEEDYMADAKTIVNVQTMFRLFPSLSITTELTHPSNMRF
MQFRAKDSYSLALSKLEKQERENGSNLAFMFRLPFAAGRVFSISMLDTLLYQSFVKDYMITITRLLLGLD
TTPGSGYLCAMKVTEDDLWIRTYGRLFQKLCSSSAEIPIGIYRTECHVFSEPHDVRAQSQISVNMEDCED
TREAKGPWGTRAASGSGSTHGRHGGSADPVEHPLLRRKSLQWARKLSRKSTKQAGKAPVATDWITQQRLS
LYRRSERQELSELVKNRMKHLGLPTTGYEDVANLTASDVMNRVNLGYLQDEMNDHHQNTLSYVLINPPPD
TRLEPNDIVYLIRSDPLAHVASSSQSRKSSCSNKLSSCNPETRDETQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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