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Report for CCDS39235.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39235.1 Public Mus musculus 5 Rfc5 23 108 98 CCDS HistoryNCBI Gene:72151Re-query CCDS DB by CCDS ID:39235.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39235.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086461.12 ENSMUSP00000083652.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086461.12Link to Ensembl Protein Viewer:ENSMUSP00000083652.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000086461Re-query CCDS DB by Protein ID:ENSMUSP00000083652
Original member Current member NCBI NM_028128.1 NP_082404.1 Accepted alive Link to Nucleotide Sequence:NM_028128.1Link to Protein Sequence:NP_082404.1Re-query CCDS DB by Nucleotide ID:NM_028128Re-query CCDS DB by Protein ID:NP_082404Link to BLAST:NP_082404.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082404.1 339 Q9D0F6 339 100% 0 0

Chromosomal Locations for CCDS 39235.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 117379810 117379906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117380767 117380821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117381836 117381913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117382336 117382465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117382779 117382860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117383395 117383554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117384531 117384604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117385388 117385467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117386722 117386858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117387869 117387933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117388917 117388978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGACGGCGGCCGCGCCTTCGCAGCAGCGGCCCGCGGCGGCCCGGGCCCGGAACCTGCCCTGGGTTGAGA
AGTACCGGCCACAGACCCTGGCCGATCTCATTTCTCACCAGGACATTCTGAGTACCATTCAGAAGTTCAT
CAGTGAAGACCGCCTGCCACACCTACTTCTCTATGGCCCTCCAGGGACAGGAAAGACATCCACCATCCTG
GCCTGTGCCAAGCAACTGTACAAAGATAAAGAATTTGGCTCCATGGTCTTGGAGCTGAATGCTTCTGACG
ACCGAGGGATCGATATTGTTCGGGGGCCAATCCTCAGCTTTGCCAGCACAAGGACAATCTTCAAGAAAGG
GTTTAAGCTTGTGATCCTGGACGAAGCCGACGCCATGACTCAGGATGCCCAGAACGCCTTGAGACGAGTG
ATTGAGAAGTTCACAGAAAACACCAGGTTCTGCCTCATCTGTAACTACCTGTCCAAGATCATCCCTGCCT
TGCAGTCTCGGTGCACGAGGTTCCGATTTGGCCCTCTGACACCCGAGCTCATGGTCCCTCGACTGGAACA
TGTAGTACAAGAAGAGAATGTGGATATAAGTGAAGATGGAATGAAGGCCCTTGTCACTCTGTCCAGTGGG
GACATGCGAAGGGCTTTGAACATCCTTCAGAGTACCAATATGGCCTTTGGGAAGGTGACAGAGGAGACTG
TCTACACCTGCACCGGACACCCACTCAAGACGGACATTGCCAATATACTGGACTGGATGCTCAATCAGGA
CTTCACCACTGCCTACAAAAACATCATGGAGCTGAAGACTCTGAAGGGCTTGGCGCTGCATGACATCCTG
ACAGAGGTTCACTTGTTTGTACACAGAGTTGACTTTCCATCTTCAGTTCGGATACACTTATTGACCAAAA
TGGCAGACATCGAGTACAGACTTTCTGTTGGCACCAGTGAGAAGATACAGCTGAGCTCCCTCATCGCCGC
TTTTCAAGTCACCAGAGACCTGATAGTTGCAGAGGCCTAG

Translation (339 aa):
MTAAAPSQQRPAAARARNLPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTIL
ACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV
IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDGMKALVTLSSG
DMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQDFTTAYKNIMELKTLKGLALHDIL
TEVHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKIQLSSLIAAFQVTRDLIVAEA


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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