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Report for CCDS19387.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19387.1 Public Mus musculus 5 Ugt2a3 23 108 98 CCDS HistoryNCBI Gene:72094Re-query CCDS DB by CCDS ID:19387.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19387.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031195.2 ENSMUSP00000031195.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031195.2Link to Ensembl Protein Viewer:ENSMUSP00000031195.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000031195Re-query CCDS DB by Protein ID:ENSMUSP00000031195
Original member NCBI NM_028094.3 NP_082370.2 Updated not alive Link to Nucleotide Sequence:NM_028094.3Link to Protein Sequence:NP_082370.2Re-query CCDS DB by Nucleotide ID:NM_028094Re-query CCDS DB by Protein ID:NP_082370
Current member NCBI NM_028094.4 NP_082370.2 Accepted alive Link to Nucleotide Sequence:NM_028094.4Link to Protein Sequence:NP_082370.2Re-query CCDS DB by Nucleotide ID:NM_028094Re-query CCDS DB by Protein ID:NP_082370Link to BLAST:NP_082370.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082370.2 534 Q8BWQ1 534 100% 0 0

Chromosomal Locations for CCDS 19387.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 87325452 87325746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87327074 87327293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87327682 87327769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87329537 87329668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87331218 87331366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87336443 87337163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1605 nt):
ATGGTCTCTGAAAAATGTGTTGCGGCATTTTTTCTGCTGCAGCTTTGCTGGGCCGGCTGTGGATTCTGCA
GCAAGGTCCTCGTGTGGCCCTGTGATATGAGCCACTGGCTGAATCTAAAGACTATTCTTGAGGAGCTTGG
AGCAAGAGGGCACGAGGTAACAGTCCTGAAATACCCCAGTATCATCATAGATCAGAGTAAACGTATTCCA
CTGCACTTTGAGAATATTCCTTTGCTGTATGAAATCGAGACAGCTGAGAATCGTTTAAATGAGATTGCAA
ATCTAGCTGTGAATGTCATTCCAAACCTGTCACTGTGGGAAGCAGCAAAAACATTACAAGACTTCTTTCT
TCAAGTAACTGGAGATTTTGAAAGTATTTGTAGGAGTGTATTGTACAACCAGAAATTCATGGACAAGCTA
CGGGATGCACAATATGATGTAGTGGTTATAGACCCTGTCGTTCCCTGTGGAGAGTTGGTGGCAGAAGTGC
TTCAGATCCCTTTCGTATACACACTGAGGTTCAGCATGGGCTACTACATGGAGAAACACTGTGGCCAGCT
TCCAATTCCACTCTCGTATGTACCGGTTGTCATGAGTGAGCTGACAGACAATATGACCTTCACAGAGAGG
GTGAAAAATATGATGTTTTCACTGTTGTTTGAGTACTGGCTCCAGCAATATGACTTTGCATTCTGGGATC
AGTTTTACAGTGAAACCCTAGGAAGGCCCACAACGTTCTGTAAGACTGTGGGGAAAGCTGACATTTGGCT
AATCCGAACATATTGGGATGTTGAGTTTCCTCGTCCATATTTACCAAATTTTGAGTTTGTGGGAGGACTG
CACTGCAAACCTGCCAAGCCTTTACCTAAGGAAATGGAAGAATTTGTTCAGAGCTCTGGAGAACATGGTG
TAGTAGTATTTTCACTGGGGTCAATGGTCAAAAACCTGACAGAAGAGAAAGCCAACCTCATTGCCTCTGT
CCTTGCCCAGATTCCCCAGAAGGTTTTGTGGAGATACTCAGGCAAGAAGCCAGCCACATTAGGATCCAAT
ACTCGGCTTTTTAATTGGATTCCCCAGAATGATCTTCTTGGACATCCTAAAACCAAAGCTTTCATCACAC
ATGGTGGAACAAACGGGATTTATGAAGCCATTTACCATGGGGTCCCTATGGTGGGCGTTCCCATGTTAGG
GGATCAGCCTCACAACATCGCTCACATGGAGGCCAAGGGAGCAGCCCTGAAAGTCAGCATCAGTACAATG
ACGAGCACAGATTTACTCAGTGCTGTGAGGGCAGTCATTAATGAGCCTTCTTATAAAGAGAATGCCATGC
GGTTATCAAGAATCCACCATGATCAGCCAGTGAAGCCCCTGGACCGAGCAGTCTTCTGGATTGAGTTTGT
CATGCGTCACAAAGGAGCCAAGCATCTTCGTGTGGCAGCCCATGACCTCAGCTGGTTTCAGTACCACTCC
CTAGATGTGATTGGGTTCCTATTGTTGTGTGTCGTTACTCTGACATTCATCATCACTAAATTTTGTTTGT
TTGTGTGTCAAAAACTTTATATGAAAGAAAGTAAGAAAATGGGGAACAGAAAGAAAAAGAACTAG

Translation (534 aa):
MVSEKCVAAFFLLQLCWAGCGFCSKVLVWPCDMSHWLNLKTILEELGARGHEVTVLKYPSIIIDQSKRIP
LHFENIPLLYEIETAENRLNEIANLAVNVIPNLSLWEAAKTLQDFFLQVTGDFESICRSVLYNQKFMDKL
RDAQYDVVVIDPVVPCGELVAEVLQIPFVYTLRFSMGYYMEKHCGQLPIPLSYVPVVMSELTDNMTFTER
VKNMMFSLLFEYWLQQYDFAFWDQFYSETLGRPTTFCKTVGKADIWLIRTYWDVEFPRPYLPNFEFVGGL
HCKPAKPLPKEMEEFVQSSGEHGVVVFSLGSMVKNLTEEKANLIASVLAQIPQKVLWRYSGKKPATLGSN
TRLFNWIPQNDLLGHPKTKAFITHGGTNGIYEAIYHGVPMVGVPMLGDQPHNIAHMEAKGAALKVSISTM
TSTDLLSAVRAVINEPSYKENAMRLSRIHHDQPVKPLDRAVFWIEFVMRHKGAKHLRVAAHDLSWFQYHS
LDVIGFLLLCVVTLTFIITKFCLFVCQKLYMKESKKMGNRKKKN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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