NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28834.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28834.1 Public Mus musculus 17 Klhdc3 23 108 98 CCDS HistoryNCBI Gene:71765Re-query CCDS DB by CCDS ID:28834.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28834.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071841.6 ENSMUSP00000071743.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071841.6Link to Ensembl Protein Viewer:ENSMUSP00000071743.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000071841Re-query CCDS DB by Protein ID:ENSMUSP00000071743
Original member Current member EBI ENSMUST00000165007.8 ENSMUSP00000128271.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165007.8Link to Ensembl Protein Viewer:ENSMUSP00000128271.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165007Re-query CCDS DB by Protein ID:ENSMUSP00000128271
Original member Current member NCBI NM_001163729.2 NP_001157201.2 Accepted alive Link to Nucleotide Sequence:NM_001163729.2Link to Protein Sequence:NP_001157201.2Re-query CCDS DB by Nucleotide ID:NM_001163729Re-query CCDS DB by Protein ID:NP_001157201Link to BLAST:NP_001157201.2
Original member Current member NCBI NM_027910.3 NP_082186.2 Accepted alive Link to Nucleotide Sequence:NM_027910.3Link to Protein Sequence:NP_082186.2Re-query CCDS DB by Nucleotide ID:NM_027910Re-query CCDS DB by Protein ID:NP_082186Link to BLAST:NP_082186.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157201.2 382 Q8VEM9 382 99.7382% 0 1
NP_082186.2 382 Q8VEM9 382 99.7382% 0 1

Chromosomal Locations for CCDS 28834.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 46675086 46675152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46676316 46676394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46676504 46676577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46676697 46676805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46676944 46677030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46677105 46677318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46677428 46677499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46677685 46677800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46677932 46678108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46678281 46678434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1149 nt):
ATGTTACGGTGGACAGTGCATCTGGAGGGCGGGCCACGCAGGGTGAACCATGCTGCAGTGGCTGTCGGGC
ACCGAGTATATTCCTTCGGGGGTTACTGCTCTGGGGAAGACTACGAAACACTACGGCAGATAGATGTGCA
CATTTTCAATGCTGTGTCCTTGCGTTGGACAAAGCTGCCCCCAGTGAGGCCTGCCGTCCGAGGGCAGGCT
CCTGTCGTTCCCTACATGCGCTATGGGCACTCAACCGTCCTCATTGATGACACCGTCTTCCTTTGGGGTG
GGCGCAATGACACTGAAGGGGCCTGCAACGTACTCTACGCCTTTGATGTCAATACTCACAAGTGGTCTAC
ACCCCGAGTGTCAGGGGCAGTTCCTGGGGCACGGGACGGACATTCAGCTTGTGTCCTGGGCAAGATCATG
TACATTTTTGGGGGATATGAACAGCTGGCCGACTGCTTTTCCAACGACATCCACAAGCTGGATACCAGCA
CCATGACATGGACTCTTGTTTGTACAAAGGGCAATCCTGCACGTTGGAGGGACTTCCACTCAGCCACAAT
GCTGGGCAATCACATGTATGTCTTTGGGGGCCGTGCAGACCGCTTTGGGCCATTTCATTCCAACAATGAG
ATCTACTGTAATCGAATTCGAGTCTTTGATACCAGAACGGAGGCCTGGCTCGACTGTCCTCACACGCCGG
TGCTGCCTGAGGGGCGCAGGAGCCATTCAGCCTTTGGCTACAATGGAGAGCTGTACATCTTTGGTGGCTA
CAATGCAAGGCTGAATCGGCATTTCCATGACCTCTGGAAGTTTAATCCTGGGTCCTTTACCTGGAAGAAG
ATTGAACCAAAGGGGAAAGGACCGTGTCCCCGCCGCCGCCAGTGTTGCTGTATTGTTGGTGATAAAATTG
TCCTCTTTGGCGGTACCAGCCCCTCTCCCGAGGAAGGCCTGGGGGATGAATTTGACCTCATAGATCATTC
TGACTTACACATCTTGGACTTCAGCCCTAGTCTGAAGACTCTGTGCAAGCTGGCGGTGATTCAGTATAGC
CTGGACCAGTCCTGTCTGCCCCATGACATCAGGTGGGAGCTCAACGCCATGACCACCAACAGCAATATCA
GCCGCCCCATTGTCTCCTCCCATGGCTAG

Translation (382 aa):
MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPAVRGQA
PVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVSGAVPGARDGHSACVLGKIM
YIFGGYEQLADCFSNDIHKLDTSTMTWTLVCTKGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNE
IYCNRIRVFDTRTEAWLDCPHTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPGSFTWKK
IEPKGKGPCPRRRQCCCIVGDKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYS
LDQSCLPHDIRWELNAMTTNSNISRPIVSSHG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH