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Report for CCDS83963.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83963.1 Public Mus musculus 12 Ttc6 23 108 98 CCDS HistoryNCBI Gene:70846Re-query CCDS DB by CCDS ID:83963.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 83963.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172939.7 ENSMUSP00000134273.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172939.7Link to Ensembl Protein Viewer:ENSMUSP00000134273.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172939Re-query CCDS DB by Protein ID:ENSMUSP00000134273
Original member Current member NCBI NM_001312644.1 NP_001299573.1 Accepted alive Link to Nucleotide Sequence:NM_001312644.1Link to Protein Sequence:NP_001299573.1Re-query CCDS DB by Nucleotide ID:NM_001312644Re-query CCDS DB by Protein ID:NP_001299573Link to BLAST:NP_001299573.1

Chromosomal Locations for CCDS 83963.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 57575817 57576686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57616290 57616403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57617447 57617659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57621971 57622095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57626571 57626762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57643040 57643181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57649415 57649519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57654764 57654856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57658065 57658139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57660238 57660596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57672933 57673386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57673692 57673821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57674599 57674768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57677130 57677266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57686252 57686421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57688523 57688643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57689685 57689835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57694416 57694498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57696918 57696994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57697365 57697525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57702226 57702360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57704401 57704550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57705537 57705677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57706805 57706918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57711209 57711328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57714068 57714141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57725572 57725782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57728407 57728559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57729312 57729482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57736968 57737193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57737584 57737720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5574 nt):
ATGTCCACCATCCCAAAGCACTTCGGACTGACAGCCAGAGAGGAATCATACATGTTCAAAGAGCTTGAGA
AGATTCGCCAGAAAACCAAGAAGGATTATGAGCAACTCAGGCAGAGACTGGCCGCCAGGCCGACTTTGAA
GGCACGTTATGAAGACCAGGAGAAGGAAGAACGCCCGGGCACAGCAGGCGGCAGTGGGGAGAAGAAGGGG
CACGTGTCCTGGGCTGCCAAGCCGTCGTCTGGGGCGCAGAGCGGGGAGCGCCCCGCCGCGGCCGACCTGC
AGGGGGCGCCGCACAGCGCGCGAGGCAGCCCCGGGAAGCCCCAGCGGTTCAGTCCGCGGGACTTCTACAT
GCGGAGCTCCGCGTTCCGGCGGCATCCTCCCTACAAGGAGGCGCCGGCCATCGCCCCGCAGGTTGGCACC
ACCCGACCGGTGATCCTCCTGCGGCCGCGCTCGCGCCGGAAGAGGTTGCGCGAGAAGGGCCGGGGGGCGC
CGGTGACCACACGCGTGTCCAAGGGCCGCGCGCAAGAATCGCCCGTGCTCGACGTAACCCACACCCGGTA
CAGACTCGCCAGCTCCTTGTCCAGCCTGAGCAGCGATATTGACGACAGCGCGCGGTTGCGCAGGCTGCGG
ATTCGTACCCACTTCCAGCGCGATCTCGTGCGATGGCACCACAAGCCCTCATCCAGATCCCGGCGCGAGG
GGAGCTCCGCGAGCCAGGGAACCGCGCCTCTGCTGGGGATACGCTACTTGCCCAAGAACATCGAGGAGAT
CATCGCCTCTCTGCAGTCCGAAGCCCAGCAGGCCTCAGACCAGACCATCAAGGAGCTTATTCAGAGCATC
CTGGGCCAGAACTACGACATCGCAATGGAAGATATTTCTTTGATGGAACAAATGTACCTCAGACCATCTC
AGGTGCAATTTGAAGTACCCAAGGAGGTGGAAGAGAAAAATTTCCCACCAAGTATTACGGAACATCCAGT
TGTGCCGAGCATTTATGAGGAGCTCCCGGAGACTGTGTCAAGCATCTTCCAGGTGGAACAGGAGGAAGCT
ATGAAATGGGTAGACAGAGACGAAAATATCGCAGCTTTTAAATCTCAGGAAACGTTAGACATTGTGCCAC
CTGAGGACGACGGTAAACCTTTGGATAGTGCTCTTCCCACAACTGATGCAAAACTAACCAGCCAGCCAAC
TTTAAAGGTGGAACCAAGAGGATTCATGCAAATCAGAGGAAGAGAAGTTAAGCCAACATATAAAAGTAGA
CCAAAAAAGTTACCGAAACCAAGAATATATGTAAAACCTGAGGATAAAAAACTAATTAAAAAAATACCAC
AGGCTCATCTCCCTTCTCATCTCCATGACCTGTGCACCACAGTCCCAACCATGGAGTTGCCTGTGGATCT
GTACCTGGCTTCTCGAGTGTACCACACCCCTGACAGGAAAGGTCACAAGGCTGTCCTTGGACTATTGGGG
TTGCCTCTTTTAGGTGACCACTGTGTTGATGAACAGAGAGAAAGACTGATATACGGTGTTCCTGTTATGA
GTGAGAAGCAGAAATATACTGGTGTTACTTCAGTACCAGCAAAGAAATTCCCTGAACCAGAACAGACAAA
TCAGTGGGAAGCCAGCAAAGCAAACCTACAGCTCTCAGGAGAAGAAGTGTCTGCATATCCTGGGATTTCA
AAGATGTTTTGGAATCTTTCTGCACCTAAATTTGCTCTTCCAGAATCAACCATAAGAGAAACTTTATATC
CAAAATATGAGAGTGTTCAGACAAGCAGACTCTTAACTGAGAAATTATCTGTAACCAAGGAGACTGAGAT
TATTGTAAATACCTCCACCAAAAGAAGTTTTAAGAATTTAATAATAAAAAAGTCTGCATCATATGAAAAT
ATCCAAACATATTCCAGTGCACCATATACACGATTAAAGAGATCAAAGTCTAAATTTGAGTTGAGGAAAG
AAGAGACCCCACTGCCATTTATAATGAAGGACGACATAGACACCAACTTGGAACAGTTGAAGTACCAGAA
GAAGAAGGAGCTGGAGCACCAGCTCGCCAAGCAAAGAATCTCGTTTAACCTCTCCCGAAAGGACAGCCTG
GAAAGCCTTCAGGGCTCAGAAGACATGAAAATCCTGTCTATGTCTCTCATTGAAGCATCAAGAAAAGCTG
GCATTACCTACGTTGTATTTCCTAGTAAAAAGAAGAAACTCCTGAAGAAAGGGACGAAGTTCCAGAAGAT
GGCACACGTGTATGAGAAGCTCTCGGGGCCGCCGAAAAAAATCCAAAGATCAGCATCTCATGGAGTACTT
CCTGGAGAGAGAAAGTATTTCCTTAAAGTTCCATTATATGAGCGTCAAATAAGGTGCCCCAGCGTACCCA
CAATTTTAAATTTTGATAAATTTGCTGAGAGCAGAGGAGGAATACCAAAAAATACTGATCCTTGGACATG
GGTTCTGGAGTTATTTGCTAAAGACAAACCTCGGCAAACACACACCGCAGTTGCATCATCTGCTCAAGAA
GATGTTCCAGAGCCAGTGATAGAGCTCTCCAAACTGGAGTTAAGCGATCACGTAAAGTGTAACCTTCCAC
CAGAGGTCATTAAGTATTACGAGTCTGAAGTGGAGAAGTTGACTCAAGAAATAAAAAGTGAGAAAAGAAA
TCTGGCATTTGTGTACTGTAGGCGTGGAGCCATTTACCGGAAACTGGGAAAGCTGCAAAGTGCCATGAAT
GACCTACAGGAAGCTATATTCCAGGAGCCATTCTTTCTAAATGCCTATTGGCACAGACATTTCATTTATC
TTTTCCAAGACAAAGTCAATGATGCTTTGGATGATTTGAATTTCATAACTAAGTACAATAAAAACCATGC
AGAGGCATACTTGTCAAAGGCAGAGATTTTCAGAGAGAAGGACATTACATTGGCAATCCTGAATTACAGT
CAGGCCATTAAGTGCAGGCCCAAAGATGCTGACCTTTATTTCAAGAGAGGGGAGATGTACGAGAAGACAA
ACAAAGTGCTGGCTATTGATGACTACTCTAAATGTATTTACTATAATCGCAAAAGATCAGATGCATTATG
GAAACGTGGGATGTTTTACTTTGAAAATGGAAACTGGATTGGAGCCGTATATGATTTTACATCTCTGTTA
AAACTTGACCCCTATAATTCCAAAGCAAGGACATACCGGGGAAGAGCATATTTTAAAAGGAATTTATATA
AGCAAGCAACCCAAGATTTTTCTGCTGCCATCCACTTAGACCCCAACAACTGGGTAGCGCTGTACTACCG
AGCCTGCTTATTTAGAAAGAGTAGCCCTTACAGAGCACTGCAGGATTACAGCGTGTCAGTTCTTATAAAT
GATGGCTACGATAATCTTAATTGTTTTCTACATCGGGGCATACTCTATACACAACTAAAATTTTGGATGC
TGGCGATTTGTGATTTTGAAACTGTTGTTTCTCTTGAAAGAAATGCTACTTTGGCTTATATAAATATTGG
CATCATATATCTAGAACACTTGGATAATTATACTGAAGCCTTTTGGTGGTTTACTGAAGCAATTAAAGTT
GATCCTTTATATCTTCAAAGCTATATTTGTAGAGCAGAAACCTATTCTAAGCTGCACAAACTGAAAAGGG
CAGTAATTGAATTAACTCGTGCCATCCATCTCCAGCCTGATGCAATCCACCTATATATAATGAGAGGACA
GTTTCTTCTTATGATGAAGAGTTATGATCTTGCAAAATTCACTATTTATCAAGTAGCAGAAATGAACAAA
GGTATCATTGAGATGTCCCCGATACAGGAAGCACTCATTTACTCATTTTGTGAAAACCATGACAAGGCCA
TTCACATCTTGGAAGGGGTCATAGCCAGTAAACCAGACATCTCCACTTATGCACTCTTGGCAAAAGCCCA
GATGAAGGCCAAGAGAATCAAGGAGTCTGTGAGACTATTTAAGAAGGCATTGGAACTGTACACATTTTCT
GACAAAGGACCAGTTGCCACTAGTGTTTCAGCAGAGTGTCTGTATAACCTGGGTCTTTGTTACATGGAGG
AAGGCAATTTTCAAATGGCTTTTGAATCATTTACAAAAGCCGTGAAAGCAAATCCCGAATTTGCAGAAGC
CTTTTATCATCGGGGACTTTGTAAAGTAAAACTCAACAAGCAAAACTCAATTCTGGACTTTAATCGGGCA
CTTACACTAAATCCCAAACATTACCAGGCATATTTAAGCCGAGTAGCCTATTATGGTTTAAAGGGCAGAT
ACTCCAAAGCCATTCTGAACTGTAACGAGGCCATCAAACTTTACCCTGAGAGTGTGCGTGCCTACATCTG
CAGAGGAGTTCTGAAATACTACAACAGAACTTACAAGCTAGGTATTACAGATTTATCTACAGCTATCAAG
ATGGACAAGAACAATTACACAGCATATTATAACAGAGCCCTGTGTTACACCAAGATAGGGGAGCATCAGA
TGGCTTTAAGAGATTATGGAATTGTGCTGCTTCTTGATGCTGGAGAAAACATAGCATTAAATACCCTCAT
TAACCGTGGACTCATCTATACTGAACTGAAGCAGTATGGCTTTGCACTAGAGGATTTTAAACAAGCCGCA
CTGATGAGCGGGACTAGTGTGAGCCTTTGTCAAGCTACTGCCACGTGCCACCACAGAATTAAAGAGTTTG
AAGGAGCTGTTGAATTCTTTACCAGGGCTATCAAAATCAACCCACATTACGTGGATGCTTATATTGGACG
GGGGAATTCTTACATGGAGTATAGTCAGGAAGATGCTATGATACAAGCCCAGAAGGACTTTCTGAAAGCA
CTTCATCTTGACCCATCATGTTTAAAAGCCAGAATTAGTCTAGGCTATAATTTGCAGGCTCAAGGAAAAT
TCCAGAAAGCTTGGATACACTTTACTGTTGGCATAGAATCTAATCCAAAGAGCTATCTAGCCTATGAAGG
AAGAGCTGTGGTTTGTCTTCAAATGAGTAATTATTTCGCTGCAATGCAGGATATCAATTGTGCCATAAAG
ATCAATTCGACAGCAGAATTCCTAACAAATCGTGGTGTGATTCATGAGTTTATGGGCCAACAACAGAGCG
CAATGGCGGACTATCAAGCAGCAATTTCTCTGAACCCCAGCTACTCACTTGCTTACTTTAACGCGGGAAA
CATCTACCTTCACCACCGGCAGTTTTCTCAGGCCAGCGACTACTTCTCAACAGCCTTGAAGTTTAATCCA
GAAAACGAGTATGCTCTCATGAATCGAGCTGTTACAAACTCAGTGTTAAAGAAATATGAAGAAGCAGAAA
AAGATTTTTCATGTGCAATGGAACGTTGTCCCCACTGGGCTGCACTGTATTTTAATAGAGCAAGTTTCTA
TGTCTACTTAAAGAAGTATAAGCTTGCTGAAGAGGACCTTGGTATAGGCCTGTCCTTGAAGCCTGATGAA
GCTATAATGTATAATCTCAGAGCACAAGTCCGTGGCAAAATGGGACTGATAGCGGAAGCTATGAGTGACT
ACAACCAAGCCCTTGATCTTGAAGAATGCTCCACAGCTATGTGA

Translation (1857 aa):
MSTIPKHFGLTAREESYMFKELEKIRQKTKKDYEQLRQRLAARPTLKARYEDQEKEERPGTAGGSGEKKG
HVSWAAKPSSGAQSGERPAAADLQGAPHSARGSPGKPQRFSPRDFYMRSSAFRRHPPYKEAPAIAPQVGT
TRPVILLRPRSRRKRLREKGRGAPVTTRVSKGRAQESPVLDVTHTRYRLASSLSSLSSDIDDSARLRRLR
IRTHFQRDLVRWHHKPSSRSRREGSSASQGTAPLLGIRYLPKNIEEIIASLQSEAQQASDQTIKELIQSI
LGQNYDIAMEDISLMEQMYLRPSQVQFEVPKEVEEKNFPPSITEHPVVPSIYEELPETVSSIFQVEQEEA
MKWVDRDENIAAFKSQETLDIVPPEDDGKPLDSALPTTDAKLTSQPTLKVEPRGFMQIRGREVKPTYKSR
PKKLPKPRIYVKPEDKKLIKKIPQAHLPSHLHDLCTTVPTMELPVDLYLASRVYHTPDRKGHKAVLGLLG
LPLLGDHCVDEQRERLIYGVPVMSEKQKYTGVTSVPAKKFPEPEQTNQWEASKANLQLSGEEVSAYPGIS
KMFWNLSAPKFALPESTIRETLYPKYESVQTSRLLTEKLSVTKETEIIVNTSTKRSFKNLIIKKSASYEN
IQTYSSAPYTRLKRSKSKFELRKEETPLPFIMKDDIDTNLEQLKYQKKKELEHQLAKQRISFNLSRKDSL
ESLQGSEDMKILSMSLIEASRKAGITYVVFPSKKKKLLKKGTKFQKMAHVYEKLSGPPKKIQRSASHGVL
PGERKYFLKVPLYERQIRCPSVPTILNFDKFAESRGGIPKNTDPWTWVLELFAKDKPRQTHTAVASSAQE
DVPEPVIELSKLELSDHVKCNLPPEVIKYYESEVEKLTQEIKSEKRNLAFVYCRRGAIYRKLGKLQSAMN
DLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEIFREKDITLAILNYS
QAIKCRPKDADLYFKRGEMYEKTNKVLAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLL
KLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRKSSPYRALQDYSVSVLIN
DGYDNLNCFLHRGILYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLEHLDNYTEAFWWFTEAIKV
DPLYLQSYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAKFTIYQVAEMNK
GIIEMSPIQEALIYSFCENHDKAIHILEGVIASKPDISTYALLAKAQMKAKRIKESVRLFKKALELYTFS
DKGPVATSVSAECLYNLGLCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNKQNSILDFNRA
LTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIK
MDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALNTLINRGLIYTELKQYGFALEDFKQAA
LMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDAMIQAQKDFLKA
LHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIK
INSTAEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNP
ENEYALMNRAVTNSVLKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYLKKYKLAEEDLGIGLSLKPDE
AIMYNLRAQVRGKMGLIAEAMSDYNQALDLEECSTAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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