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Report for CCDS80488.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80488.1 Public Mus musculus 6 Umad1 23 108 98 CCDS HistoryNCBI Gene:100036521Re-query CCDS DB by CCDS ID:80488.1Re-query CCDS DB by GeneID:100036521See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80488.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159433.7 ENSMUSP00000124564.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159433.7Link to Ensembl Protein Viewer:ENSMUSP00000124564.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159433Re-query CCDS DB by Protein ID:ENSMUSP00000124564
Original member Current member EBI ENSMUST00000159168.2 ENSMUSP00000125134.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159168.2Link to Ensembl Protein Viewer:ENSMUSP00000125134.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159168Re-query CCDS DB by Protein ID:ENSMUSP00000125134
Original member Current member NCBI NM_001302354.1 NP_001289283.1 Accepted alive Link to Nucleotide Sequence:NM_001302354.1Link to Protein Sequence:NP_001289283.1Re-query CCDS DB by Nucleotide ID:NM_001302354Re-query CCDS DB by Protein ID:NP_001289283Link to BLAST:NP_001289283.1

Chromosomal Locations for CCDS 80488.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 8270500 8270581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8373906 8373967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8426971 8427228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (402 nt):
ATGTTTCACTTCTTCCGAAAGCCTGCAGAATCCAAAAAGCCCTCTGGGCCGGAACCGGAAGCAGATGGAT
TTGTCCTCTTAGGAGCTACAGCAAATGAAGTGAGATGTAAAACTTCTGAAGCAGAAGGCAGCCAGGCTTT
GGAGACCGGCAAAGAAGACACATCCAGCGTGACTGTATCAGGCCCCGAGACAGAGAATCAGACAGGCCAG
ACTCTGCAGAACAACTCACTAACAGCTGAGCTCCTGAGCGATGTGCCCTTCACCCTGGCCCCACATGTGC
TGGCGGCACAGGGCACCATCAGCGACCTTCCTGACCACGTACTCTCATACGATGTCGGCGACAACTTGTC
CCGATTCTGGTATGATTTCACTCTTGAAAATTCAGTCCTCTGTGATTTGTAG

Translation (133 aa):
MFHFFRKPAESKKPSGPEPEADGFVLLGATANEVRCKTSEAEGSQALETGKEDTSSVTVSGPETENQTGQ
TLQNNSLTAELLSDVPFTLAPHVLAAQGTISDLPDHVLSYDVGDNLSRFWYDFTLENSVLCDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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