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Report for CCDS22721.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22721.1 Public Mus musculus 8 Irf8 23 108 98 CCDS HistoryNCBI Gene:15900Re-query CCDS DB by CCDS ID:22721.1Re-query CCDS DB by GeneID:15900See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22721.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047737.9 ENSMUSP00000040245.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047737.9Link to Ensembl Protein Viewer:ENSMUSP00000040245.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000047737Re-query CCDS DB by Protein ID:ENSMUSP00000040245
Original member Current member EBI ENSMUST00000162001.7 ENSMUSP00000125029.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162001.7Link to Ensembl Protein Viewer:ENSMUSP00000125029.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162001Re-query CCDS DB by Protein ID:ENSMUSP00000125029
Original member Current member NCBI NM_001301811.1 NP_001288740.1 Accepted alive Link to Nucleotide Sequence:NM_001301811.1Link to Protein Sequence:NP_001288740.1Re-query CCDS DB by Nucleotide ID:NM_001301811Re-query CCDS DB by Protein ID:NP_001288740Link to BLAST:NP_001288740.1
Original member Current member NCBI NM_008320.4 NP_032346.1 Accepted alive Link to Nucleotide Sequence:NM_008320.4Link to Protein Sequence:NP_032346.1Re-query CCDS DB by Nucleotide ID:NM_008320Re-query CCDS DB by Protein ID:NP_032346Link to BLAST:NP_032346.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288740.1 424 P23611 424 100% 0 0
NP_032346.1 424 P23611 424 100% 0 0

Chromosomal Locations for CCDS 22721.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 120739818 120739991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120743706 120743889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120745620 120745708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120747203 120747308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120748299 120748346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120753353 120753733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120754388 120754503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120754999 120755175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGTGTGACCGGAACGGCGGGCGGCGGCTGCGGCAGTGGCTGATCGAACAGATCGACAGCAGCATGTACC
CGGGGCTGATCTGGGAAAATGATGAGAAGACCATGTTCCGTATCCCCTGGAAGCATGCCGGCAAGCAGGA
TTACAATCAGGAGGTGGATGCTTCCATCTTCAAGGCCTGGGCAGTTTTTAAAGGGAAGTTTAAAGAGGGA
GACAAAGCTGAACCAGCCACGTGGAAGACGAGGTTACGCTGTGCTCTGAACAAGAGCCCAGATTTTGAAG
AAGTGACTGACCGGTCCCAGCTGGACATTTCTGAGCCATATAAAGTTTACCGAATTGTCCCCGAGGAAGA
ACAAAAATGCAAGCTGGGCGTGGCACCTGCAGGCTGCATGAGCGAAGTTCCTGAGATGGAGTGTGGCCGC
TCAGAGATTGAGGAGCTGATCAAGGAACCTTCTGTGGATGAGTACATGGGTATGACCAAGAGGAGCCCAT
CCCCACCAGAGGCCTGCAGGAGCCAGATCCTCCCTGACTGGTGGGTCCAGCAGCCCAGTGCAGGCCTGCC
ACTGGTGACCGGATATGCCGCCTATGACACACACCATTCAGCTTTCTCCCAGATGGTCATCAGCTTCTAC
TACGGGGGCAAGCTGGTGGGCCAGGCCACCACCACCTGCCTTGAAGGCTGCCGTCTCTCCCTGAGCCAGC
CGGGGCTGCCTAAGTTGTATGGGCCGGATGGCCTGGAACCCGTGTGCTTTCCGACGGCCGACACCATCCC
CAGTGAGCGGCAGAGGCAGGTGACCCGGAAGCTGTTTGGGCACCTGGAACGTGGCGTGCTACTGCACAGC
AACCGCAAGGGCGTGTTCGTGAAGCGGCTGTGCCAGGGCCGCGTGTTCTGCAGCGGCAACGCGGTGGTGT
GCAAGGGCAGGCCCAACAAGCTGGAGCGGGACGAGGTGGTGCAGGTCTTTGACACCAACCAGTTCATCCG
AGAGCTGCAGCAATTCTACGCCACCCAGAGCCGCCTACCTGACAGCAGGGTGGTCCTGTGCTTCGGGGAG
GAGTTTCCGGACACTGTGCCCTTGCGCTCCAAACTCATTCTGGTGCAGGTAGAGCAGCTGTATGCCAGGC
AGCTGGTGGAGGAAGCGGGCAAGAGCTGCGGTGCTGGCTCCCTGATGCCAGCCCTGGAGGAGCCCCAGCC
GGACCAGGCTTTCCGCATGTTTCCGGATATCTGTACCTCACACCAGAGACCCTTTTTTAGAGAAAATCAA
CAGATCACCGTCTAA

Translation (424 aa):
MCDRNGGRRLRQWLIEQIDSSMYPGLIWENDEKTMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFKEG
DKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVPEEEQKCKLGVAPAGCMSEVPEMECGR
SEIEELIKEPSVDEYMGMTKRSPSPPEACRSQILPDWWVQQPSAGLPLVTGYAAYDTHHSAFSQMVISFY
YGGKLVGQATTTCLEGCRLSLSQPGLPKLYGPDGLEPVCFPTADTIPSERQRQVTRKLFGHLERGVLLHS
NRKGVFVKRLCQGRVFCSGNAVVCKGRPNKLERDEVVQVFDTNQFIRELQQFYATQSRLPDSRVVLCFGE
EFPDTVPLRSKLILVQVEQLYARQLVEEAGKSCGAGSLMPALEEPQPDQAFRMFPDICTSHQRPFFRENQ
QITV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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