NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, June 4, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38634.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38634.1 Public Mus musculus 3 Gar1 23 108 98 CCDS HistoryNCBI Gene:68147Re-query CCDS DB by CCDS ID:38634.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38634.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029643.14 ENSMUSP00000029643.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029643.14Link to Ensembl Protein Viewer:ENSMUSP00000029643.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029643Re-query CCDS DB by Protein ID:ENSMUSP00000029643
Original member NCBI NM_026578.3 NP_080854.1 Updated not alive Link to Nucleotide Sequence:NM_026578.3Link to Protein Sequence:NP_080854.1Re-query CCDS DB by Nucleotide ID:NM_026578Re-query CCDS DB by Protein ID:NP_080854
Current member NCBI NM_026578.4 NP_080854.1 Accepted alive Link to Nucleotide Sequence:NM_026578.4Link to Protein Sequence:NP_080854.1Re-query CCDS DB by Nucleotide ID:NM_026578Re-query CCDS DB by Protein ID:NP_080854Link to BLAST:NP_080854.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080854.1 231 Q9CY66-1 231 100% 0 0

Chromosomal Locations for CCDS 38634.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 129825196 129825209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129825548 129825616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129826824 129826974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129828905 129828964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129829337 129829491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129830595 129830841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (696 nt):
ATGTCTTTCCGAGGCGGAGGTCGCGGAGGCTTTAATCGCGGTGGTGGAGGCGGAGGCTTCAACCGTGGCG
GCGGCAGCAACAACCACTTCCGAGGGGGCGGCGGAGGCGGCGGCGGCAGTTTCAGGGGCGGAGGCGGCGG
CGGCGGCGGCAGTTTCAGGGGCGGCGGCCGAGGAGGATTTGGACGAGGGGGCGGTCGTGGAGGCTTTAAT
AAATTTCAAGATCAAGGGCCTCCAGAACGTGTCGTCTTGTTAGGAGAATTCATGCATCCCTGTGAAGATG
ACATCGTGTGTAAATGTACCACCGAGGAGAACAAGGTGCCCTACTTCAACGCCCCTGTTTACTTAGAAAA
CAAAGAGCAAGTCGGGAAAGTGGATGAGATATTTGGACAGCTTAGAGATTTTTATTTTTCAGTTAAGTTG
TCAGAAAACATGAAGGCATCTTCCTTTAAAAAGCTACAGAAGTTCTATATAGACCCATACAAGCTGCTGC
CGCTGCAGAGGTTTCTGCCTCGTCCTCCTGGTGAGAAAGGACCTCCCAGAGGTGGCGGCGGTGGCGGCAG
GGGAGGTCGAGGAGGAGGAAGAGGAGGCGGTGGCCGAGGTGGTGGAAGAGGTGGTGGTTTTAGAGGAGGC
AGAGGAGGAGGTGGGGGCTTCAGAGGAGGAAGAGGAGGTGGCGGATTCCGAGGAAGGGGACATTAG

Translation (231 aa):
MSFRGGGRGGFNRGGGGGGFNRGGGSNNHFRGGGGGGGGSFRGGGGGGGGSFRGGGRGGFGRGGGRGGFN
KFQDQGPPERVVLLGEFMHPCEDDIVCKCTTEENKVPYFNAPVYLENKEQVGKVDEIFGQLRDFYFSVKL
SENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGEKGPPRGGGGGGRGGRGGGRGGGGRGGGRGGGFRGG
RGGGGGFRGGRGGGGFRGRGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH