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Report for CCDS39779.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39779.1 Public Mus musculus 7 Nop53 23 108 98 CCDS HistoryNCBI Gene:68077Re-query CCDS DB by CCDS ID:39779.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39779.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044158.12 ENSMUSP00000043981.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044158.12Link to Ensembl Protein Viewer:ENSMUSP00000043981.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000044158Re-query CCDS DB by Protein ID:ENSMUSP00000043981
Original member Current member NCBI NM_133831.3 NP_598592.2 Accepted alive Link to Nucleotide Sequence:NM_133831.3Link to Protein Sequence:NP_598592.2Re-query CCDS DB by Nucleotide ID:NM_133831Re-query CCDS DB by Protein ID:NP_598592Link to BLAST:NP_598592.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598592.2 484 Q8BK35 484 100% 0 0

Chromosomal Locations for CCDS 39779.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 15937883 15937889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15938174 15938230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15938352 15938428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15938911 15938977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15939089 15939264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15939454 15939654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15939729 15939833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15940138 15940233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15941740 15941810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15942175 15942374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15942789 15942897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15945290 15945354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15945830 15946053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1455 nt):
ATGGCTGCGGGTGGTAACAGGGACGGTGAGAAGCGCGGCTCGAGAAGCCAGGCGGACTCTGGCTTCCTGG
GGCTGCGGCCGACCTCGGTGGATCCCGCTCTGAGGCGGCGGCGGCGGGGCCCCAGAAACAAGAAGCGCGG
CTGGAGGAGGCTCGCCGAGGAGCCGCTGGGGTTAGAGGTCGACCAGTTCCTGGAAGACGTCCGGCTACAG
GAGCGCACGACCGGTGGCTTGTTGGCAGAGGCCCCAAACGAAAAGCTCTTCTTCGTGGACACAGGATTCA
AGAGAAAAGAACCAAGAAAGAAGAGGACCTTGGTCCAGAAGAAGTCACAGCGTCTCCAGAAACCCTTACG
GGTTGACCTTGCCCTTGAGAATCATTCTAAGATCCCTGCTCCCAAAGACATCCTCGCACATCAGGTCCCT
AATGCCAAGAAGCTCAGGCGAAAGGAGGAGTTATGGGAGAAACTGGCAAAGCAGGGCGAACTGCCCAGGG
ATGTGCGCAAGGCACAGGCCCGACTCCTTAGCCCTCCCACACCAAAGGCCAAACCTGGGCCCCAGGACAT
CATTGAGCGACCCTTCTATGACCTCTGGAACCCAGACAACCCTCTGGACACGCCTTTGATTGGTCAGGAT
GCATTTTTTCTGGAACAGACCAAGAAGAAAGGCGTGAGGCGGCCACAACGCCTCCACATCAAGCCTTCCC
AGGTGCCTGCAGTGGAGGTGATTCCTGCAGGAGCCTCCTACAACCCAACCTTTGAAGATCACCAGGCCCT
GCTTCGAGAGGCCCATGAGGTGGAGCTGCAGCGTGAGAAAGAGGCAGAAAAGCTGGAGCGACAGCTGGCC
CTGCCCACCTCAGAGCAAGCTGCCACCCAGGAGTCCGTGTTTCGGGAGATGTGTGAGGGCCTGCTGGAGG
AGTCTGATGGTGAGGATGAGCATGAGGCAGGCCGTGCCGGGCAGCCAGAGGCTGGTGATGGGACCACCGA
GATCTCACCCACTGGTGCTGCTGGTCCTGAGAAGAGGATGGAGAAGAAGACGGAGCAGCAGCGGCGGCGG
GAGAAAGCTGCTCGCAAGCTGCGGGTGCAGCAGGCTGCACTGAGGGCAGCCCGGCTTCAGCACCAAGAAC
TTTTCAGGCTGCGTGGGATCAAGGCCCAGGTGGCCCGAAGGCTGGCAGAACTGGCACGCCGGAGGGAGCA
GCGGCGCATACGGCGACTGGCAGAGGCTGACAAGCCCCGAAGGCTGGGACGGCTCAAGTACCAGGCTCCT
GACATTGATGTGCAGCTCAGCTCTGAGTTGTCTGGCTCACTCAGGACACTGAAGCCAGAAGGTCACATTC
TCCGAGACAGGTTCAAGAGCTTCCAGAAGAGAAATATGATTGAGCCCCGAGAACGAGCCAAGTTCAAGCG
CAAATACAAAGTGAAGCTGGTGGAGAAGCGGGCCTACCGTGAGATTCAGTTGTAG

Translation (484 aa):
MAAGGNRDGEKRGSRSQADSGFLGLRPTSVDPALRRRRRGPRNKKRGWRRLAEEPLGLEVDQFLEDVRLQ
ERTTGGLLAEAPNEKLFFVDTGFKRKEPRKKRTLVQKKSQRLQKPLRVDLALENHSKIPAPKDILAHQVP
NAKKLRRKEELWEKLAKQGELPRDVRKAQARLLSPPTPKAKPGPQDIIERPFYDLWNPDNPLDTPLIGQD
AFFLEQTKKKGVRRPQRLHIKPSQVPAVEVIPAGASYNPTFEDHQALLREAHEVELQREKEAEKLERQLA
LPTSEQAATQESVFREMCEGLLEESDGEDEHEAGRAGQPEAGDGTTEISPTGAAGPEKRMEKKTEQQRRR
EKAARKLRVQQAALRAARLQHQELFRLRGIKAQVARRLAELARRREQRRIRRLAEADKPRRLGRLKYQAP
DIDVQLSSELSGSLRTLKPEGHILRDRFKSFQKRNMIEPRERAKFKRKYKVKLVEKRAYREIQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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