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Report for CCDS15796.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15796.1 Public Mus musculus 2 Nacc2 23 108 98 CCDS HistoryNCBI Gene:67991Re-query CCDS DB by CCDS ID:15796.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15796.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028300.5 ENSMUSP00000028300.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028300.5Link to Ensembl Protein Viewer:ENSMUSP00000028300.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000028300Re-query CCDS DB by Protein ID:ENSMUSP00000028300
Original member Current member EBI ENSMUST00000114159.8 ENSMUSP00000109796.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114159.8Link to Ensembl Protein Viewer:ENSMUSP00000109796.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114159Re-query CCDS DB by Protein ID:ENSMUSP00000109796
Original member Current member NCBI NM_001037098.1 NP_001032175.1 Accepted alive Link to Nucleotide Sequence:NM_001037098.1Link to Protein Sequence:NP_001032175.1Re-query CCDS DB by Nucleotide ID:NM_001037098Re-query CCDS DB by Protein ID:NP_001032175Link to BLAST:NP_001032175.1
Original member Current member NCBI NM_026495.3 NP_080771.3 Accepted alive Link to Nucleotide Sequence:NM_026495.3Link to Protein Sequence:NP_080771.3Re-query CCDS DB by Nucleotide ID:NM_026495Re-query CCDS DB by Protein ID:NP_080771Link to BLAST:NP_080771.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032175.1 586 Q9DCM7 586 100% 0 0
NP_080771.3 586 Q9DCM7 586 100% 0 0

Chromosomal Locations for CCDS 15796.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 26059962 26060473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26061573 26061670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26062192 26062297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26064454 26064618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26089543 26090422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1761 nt):
ATGTCTCAGATGCTGCACATCGAGATCCCCAACTTCGGGAACACAGTGCTTGGCTGTCTCAACGAACAGC
GCCTGTTAGGCCTCTACTGTGATGTGTCCATCGTGGTCAAAGGCCAGGCCTTCAAGGCCCACCGTGCCGT
CTTGGCCGCCAGCAGCCTCTATTTCCGAGACCTCTTCAGTGGTAATAGCAAGAGTGCATTCGAGCTGCCG
GGCACGGTGCCGCCTGCCTGCTTCCAGCAGATTCTGTCCTTCTGCTACACAGGTAAGCTTACCATGGCGG
CCAGCGAGCAGCTCGTGGTCATGTACACAGCCGGCTTCCTGCAGATCCAGCACATCGTGGAGCGGGGCAC
AGATCTCATGTTCAAGGTGAGCTCACCCCACTGTGACTCGCAGACCGCCATGATCGAAGATGCCAGCTCG
GAGCCCCAAAGTCCCTGCAACCAGCTGCAACCGGCCACTGCTGCCTATGTCACGTCTCCTTCTGTGCCCA
TCCCGCTTCTGACCCGTGTAAAGCATGAAGCTATGGAGATGCCGCCGGCCAGTGGCCCGGGCCTGGCTTC
TAAACGCCCACTAGAGACGGGCCCTCGAGATGGTGTGGCAGTAGCTACAGGTGCTGCAGGGACACCTGGC
ACGGCCCCTCTGAAGCTGCCTCGAGTCTCCTACTATGGTGTGCCAAGCCTGGCCACTCTCATCCCCAGCA
TCCAGCAGGTACCCTATCCCCCGGGGGAGCGGACCAGTCCTGGGGCCAGCAGCCTGCCCACCACTGACAG
CCCCACCTCCTACCACAACGAGGAGGATGAAGAGGATGACGAAGCCTATGATACCATGGTGGAGGAGCAG
TATGGCCAGATGTATATTAAAGCCACAGGAAACTATGCAGTGCAAGAGAAACCAGAGCCAGTGCCCCTGG
AGAGCCGCTCCTGTGTCCTCATCCGTCGAGACCTGGTGGCACTTCCTGCCAGCCTCATCAGCCAGATTGG
GTACCGCTGCCACCCAAAGCTCTACTCAGAGGGAGATCCTGGAGAGAAACTGGAGCTTGTAGCAGGCTCC
GGGGTCTACATCACACGTGGCCAGCTCATGAACTGCCACCTGTGTGCAGGGGTGAAGCACAAGGTCCTGC
TGCGGAGGCTCCTGGCCACCTTCTTTGACAGGAACACACTGGCCAACAGCTGTGGCACTGGCATTCGCTC
CTCCACCAGTGATCCGAGCCGAAAGCCACTGGACAGCCGAGTCCTGAACGCTGTGAAACTGTACTGTCAG
AACTTTGCCCCCAGCTTCAAAGAGAGCGAGATGAACGTGATTGCCGCAGACATGTGTACCAATGCTCGCC
GTGTCCGTAAGCGCTGGCTGCCCAAGATCAAGTCCATGCTTCCAGAGGGTGTGGAGATGTACCGTAGCGT
CATGGGTGCGTCGGCCGCCAGCCTGCCTCTGGACCCCGAGTTCCCATCTGCGGCTCCACAGGTGTTTGAG
CAGCGCATCTATGCTGAGCGACGAAGTGATGCAGCCACCATCGTGGCTCTGAGAACTGATGCGGTGAATG
TCGATCTGAGCACTTCAGCCAACCCTGCCTTTGAGGCTAATGAGGAGGTGGATGGGGGTGGCTCTGTTAT
CCAGGAGGTGGCTGCCCCAGAGCAGCTGCCCGCTGATGGCCAGAGCTCCCCTCAGGCCTTTGAGCAGGGC
AACACCAGCTCCAGTAGGCCTCAGACACCAGTGGCCACAGCAACAAGAAGGCCAGAGGGCACCTATGCAG
GGACCTTGTAA

Translation (586 aa):
MSQMLHIEIPNFGNTVLGCLNEQRLLGLYCDVSIVVKGQAFKAHRAVLAASSLYFRDLFSGNSKSAFELP
GTVPPACFQQILSFCYTGKLTMAASEQLVVMYTAGFLQIQHIVERGTDLMFKVSSPHCDSQTAMIEDASS
EPQSPCNQLQPATAAYVTSPSVPIPLLTRVKHEAMEMPPASGPGLASKRPLETGPRDGVAVATGAAGTPG
TAPLKLPRVSYYGVPSLATLIPSIQQVPYPPGERTSPGASSLPTTDSPTSYHNEEDEEDDEAYDTMVEEQ
YGQMYIKATGNYAVQEKPEPVPLESRSCVLIRRDLVALPASLISQIGYRCHPKLYSEGDPGEKLELVAGS
GVYITRGQLMNCHLCAGVKHKVLLRRLLATFFDRNTLANSCGTGIRSSTSDPSRKPLDSRVLNAVKLYCQ
NFAPSFKESEMNVIAADMCTNARRVRKRWLPKIKSMLPEGVEMYRSVMGASAASLPLDPEFPSAAPQVFE
QRIYAERRSDAATIVALRTDAVNVDLSTSANPAFEANEEVDGGGSVIQEVAAPEQLPADGQSSPQAFEQG
NTSSSRPQTPVATATRRPEGTYAGTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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