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Report for CCDS27962.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27962.1 Public Mus musculus 16 Tnfrsf17 23 108 98 CCDS HistoryNCBI Gene:21935Re-query CCDS DB by CCDS ID:27962.1Re-query CCDS DB by GeneID:21935See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27962.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023140.5 ENSMUSP00000023140.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023140.5Link to Ensembl Protein Viewer:ENSMUSP00000023140.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000023140Re-query CCDS DB by Protein ID:ENSMUSP00000023140
Original member Current member NCBI NM_011608.1 NP_035738.1 Accepted alive Link to Nucleotide Sequence:NM_011608.1Link to Protein Sequence:NP_035738.1Re-query CCDS DB by Nucleotide ID:NM_011608Re-query CCDS DB by Protein ID:NP_035738Link to BLAST:NP_035738.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035738.1 185 O88472-1 185 100% 0 0

Chromosomal Locations for CCDS 27962.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 11313953 11314067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11315175 11315333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11319675 11319958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (558 nt):
ATGGCGCAACAGTGTTTCCACAGTGAATATTTTGACAGTCTGCTGCATGCTTGCAAACCGTGTCACTTGC
GATGTTCCAACCCTCCTGCAACCTGTCAGCCTTACTGTGATCCAAGCGTGACCAGTTCAGTGAAAGGGAC
GTACACGGTGCTCTGGATCTTCTTGGGGCTGACCTTGGTCCTCTCTTTGGCACTTTTCACAATCTCATTC
TTGCTGAGGAAGATGAACCCCGAGGCCCTGAAGGACGAGCCTCAAAGCCCAGGTCAGCTTGACGGATCGG
CTCAGCTGGACAAGGCCGACACCGAGCTGACTAGGATCAGGGCTGGTGACGACAGGATCTTTCCCCGAAG
CCTGGAGTATACAGTGGAAGAGTGCACCTGTGAGGACTGTGTCAAGAGCAAACCCAAGGGGGATTCTGAC
CATTTCTTCCCGCTTCCAGCCATGGAGGAGGGGGCAACCATTCTTGTCACCACAAAAACGGGTGACTACG
GCAAGTCAAGTGTGCCAACTGCTTTGCAAAGTGTCATGGGGATGGAGAAGCCAACTCACACTAGATAA

Translation (185 aa):
MAQQCFHSEYFDSLLHACKPCHLRCSNPPATCQPYCDPSVTSSVKGTYTVLWIFLGLTLVLSLALFTISF
LLRKMNPEALKDEPQSPGQLDGSAQLDKADTELTRIRAGDDRIFPRSLEYTVEECTCEDCVKSKPKGDSD
HFFPLPAMEEGATILVTTKTGDYGKSSVPTALQSVMGMEKPTHTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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