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Report for CCDS27095.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27095.1 Public Mus musculus 14 Psmb5 23 108 98 CCDS HistoryNCBI Gene:19173Re-query CCDS DB by CCDS ID:27095.1Re-query CCDS DB by GeneID:19173See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27095.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022803.5 ENSMUSP00000022803.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022803.5Link to Ensembl Protein Viewer:ENSMUSP00000022803.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000022803Re-query CCDS DB by Protein ID:ENSMUSP00000022803
Original member Current member NCBI NM_011186.1 NP_035316.1 Accepted alive Link to Nucleotide Sequence:NM_011186.1Link to Protein Sequence:NP_035316.1Re-query CCDS DB by Nucleotide ID:NM_011186Re-query CCDS DB by Protein ID:NP_035316Link to BLAST:NP_035316.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035316.1 264 O55234 264 100% 0 0

Chromosomal Locations for CCDS 27095.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 54614192 54614481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54616515 54616821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54617794 54617991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (795 nt):
ATGGCGCTGGCTAGCGTGTTGCAGCGGCCGATGCCGGTGAATCAGCACGGGTTTTTTGGGCTCGGAGGTG
GTGCAGATCTGCTGGACTTGGGTCCGGGGAGTCCTGGTGATGGGCTGAGCCTAGCCGCGCCGAGCTGGGG
CGTCCCGGAGGAGCCGCGAATCGAAATGCTTCACGGAACCACCACCCTGGCCTTCAAGTTTCTCCATGGA
GTCATTGTTGCAGCGGATTCCCGGGCCACAGCAGGTGCTTATATTGCTTCCCAGACGGTGAAGAAAGTAA
TAGAGATCAACCCGTACCTTCTGGGCACCATGGCTGGGGGTGCAGCGGATTGCAGCTTCTGGGAGCGGTT
GTTGGCTCGGCAGTGTCGAATCTATGAGCTTCGCAATAAGGAACGCATCTCGGTCGCAGCAGCCTCCAAA
CTGCTCGCTAACATGGTGTATCAGTACAAAGGCATGGGGCTGTCTATGGGCACCATGATCTGTGGCTGGG
ATAAGAGAGGCCCTGGCCTCTACTACGTAGACAGCGAGGGGAACAGGATCTCTGGGACCGCCTTCTCAGT
GGGCTCTGGCTCCGTGTATGCTTACGGCGTTATGGATCGAGGCTACTCCTATGACCTGAAAGTGGAGGAG
GCCTATGATCTGGCCCGCCGAGCCATCTACCAAGCCACCTACAGAGATGCCTACTCCGGAGGGGCAGTCA
ACCTCTACCACGTGCGGGAGGATGGCTGGATCCGGGTGTCCAGTGACAATGTAGCTGACTTACATGACAA
GTACAGTAGTGTATCTGTCCCCTGA

Translation (264 aa):
MALASVLQRPMPVNQHGFFGLGGGADLLDLGPGSPGDGLSLAAPSWGVPEEPRIEMLHGTTTLAFKFLHG
VIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASK
LLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVYAYGVMDRGYSYDLKVEE
AYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHDKYSSVSVP


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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