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Report for CCDS27027.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27027.1 Public Mus musculus 14 Apex1 23 108 98 CCDS HistoryNCBI Gene:11792Re-query CCDS DB by CCDS ID:27027.1Re-query CCDS DB by GeneID:11792See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27027.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049411.11 ENSMUSP00000042602.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049411.11Link to Ensembl Protein Viewer:ENSMUSP00000042602.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000049411Re-query CCDS DB by Protein ID:ENSMUSP00000042602
Original member Current member NCBI NM_009687.2 NP_033817.1 Accepted alive Link to Nucleotide Sequence:NM_009687.2Link to Protein Sequence:NP_033817.1Re-query CCDS DB by Nucleotide ID:NM_009687Re-query CCDS DB by Protein ID:NP_033817Link to BLAST:NP_033817.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033817.1 317 P28352 317 100% 0 0

Chromosomal Locations for CCDS 27027.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 50925270 50925324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50925517 50925704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50926161 50926353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50926456 50926973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGCCAAAGCGGGGAAAGAAAGCGGCGGCCGACGACGGGGAAGAACCCAAGTCGGAGCCAGAGACCAAGA
AGAGTAAGGGGGCAGCAAAGAAAACCGAGAAGGAGGCCGCGGGAGAGGGCCCTGTCCTGTACGAGGACCC
TCCAGATCAGAAAACCTCACCCAGTGGCAAATCTGCCACACTCAAGATATGCTCCTGGAATGTGGATGGG
CTTCGAGCCTGGATTAAAAAGAAAGGTTTGGATTGGGTAAAGGAAGAAGCACCAGATATCTTGTGCCTCC
AAGAGACCAAGTGCTCGGAGAACAAACTCCCGGCTGAACTGCAAGAGCTGCCTGGACTCACCCATCAGTA
CTGGTCAGCTCCGTCAGACAAAGAAGGATACAGTGGTGTGGGCCTACTTTCCCGCCAGTGCCCGCTAAAA
GTCTCTTATGGCATTGGCGAGGAAGAACATGATCAAGAAGGCCGGGTGATTGTGGCTGAATTTGAGTCCT
TTGTCCTGGTAACAGCCTATGTTCCCAATGCAGGCAGGGGTCTGGTAAGACTGGAATACCGACAGCGTTG
GGATGAAGCCTTCCGAAAGTTTCTAAAGGACTTGGCTTCCAGAAAGCCTCTTGTGCTATGTGGGGATCTC
AATGTGGCTCATGAAGAAATTGACCTCCGTAACCCCAAAGGAAACAAAAAGAATGCTGGCTTTACTCCCC
AGGAGCGCCAAGGTTTTGGGGAACTGCTACAAGCTGTACCATTGGCTGACAGCTTCCGGCATCTCTACCC
CAACACTGCTTACGCTTACACTTTCTGGACTTACATGATGAATGCCCGCTCTAAGAATGTTGGTTGGCGC
CTTGATTACTTTTTGCTTTCCCACTCTCTTTTACCTGCATTGTGTGACAGCAAGATCCGGTCCAAGGCTC
TTGGCAGTGACCACTGTCCCATCACCCTTTACCTAGCACTGTGA

Translation (317 aa):
MPKRGKKAAADDGEEPKSEPETKKSKGAAKKTEKEAAGEGPVLYEDPPDQKTSPSGKSATLKICSWNVDG
LRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLTHQYWSAPSDKEGYSGVGLLSRQCPLK
VSYGIGEEEHDQEGRVIVAEFESFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDL
NVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWR
LDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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