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Report for CCDS36436.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36436.1 Public Mus musculus 12 Pnpla8 23 108 98 CCDS HistoryNCBI Gene:67452Re-query CCDS DB by CCDS ID:36436.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36436.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043082.15 ENSMUSP00000043286.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043082.15Link to Ensembl Protein Viewer:ENSMUSP00000043286.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000043082Re-query CCDS DB by Protein ID:ENSMUSP00000043286
Original member Current member NCBI NM_026164.2 NP_080440.2 Accepted alive Link to Nucleotide Sequence:NM_026164.2Link to Protein Sequence:NP_080440.2Re-query CCDS DB by Nucleotide ID:NM_026164Re-query CCDS DB by Protein ID:NP_080440Link to BLAST:NP_080440.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080440.2 776 Q8K1N1 776 100% 0 0

Chromosomal Locations for CCDS 36436.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 44282667 44283704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44283793 44283942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44288171 44288322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44290566 44290660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44295898 44296069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44299234 44299291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44304911 44305105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44307919 44308114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44311325 44311599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2331 nt):
ATGTCTATTAATTTGACTCTAGATATATATATTTACTTCCTTAATAATGCAAGAAGTCTTTGTGGGAAAC
AGAGAAGCAAACAATTGCATTTTGTGTGTTCTAAACAGTATTGGCGCATGAACCATGTCAATGTGCACAG
AGAGTTTCACACAAGTAAGAAAAGCTGTAAATGGAATAGAAGTGAAGCACATTGCAGCAAACACTGGCAC
TCTCCAAGCAACCATGGCTTACACTTTGGAATTGTGAGACTTAGCACTTCTGCTCCCAAGGGACTTACAA
AAGTGAGCATTCATATGTCCCGTATTAAAAGTACTTTGAATTCAGTTTCAAAGGCTATTTTTGGCAGTCA
AAATGAAATGGTTACACGGTTAGCTCAATTTAAGCCAAGTTCTCGAATATTAAGAAAAGTATCAGATAAG
GGATGGTTAAAACAAAAAAATGTTAAGCAAGCCGTCGAGTCTCTGAAAAACTATAGTGATAAATCAGCAG
GAAAGAATTCTTTAGCAGAACAGAAAAGTTACTTTGCAGATAAAGAAGAAGATTCAGGTAAACACAGCCT
TTTCCATTACACATACGGTATAACCACCAGATTTGGAGAGTCATTCTCCGTTTTAGCAAATCATATTAAT
TCCTATTTCAAAAGCAAGGGAAAAATGTCTCAAACAAAGGAAGATAAACAGCTTCAGGACAAGCCAGACC
TTGAAGAAAGGAAATCCAGTTCTCCAGGCCCTGACACCGTGGCAGACAGGCCAGACTCGGAATCTCCCCT
AGAAGTTAAAGACAAACTTTCCAGCCCGACCCAGATGCCTGAGGCTCACCCAGTGTCTGCAAAACAAAGT
ATTGCTAACTTCCTTTCTCGTCCCACTGAAGGCGTACAAGCCTTAGTCGGTGGTTACATTGGTGGACTTG
TACCCAAATTAAAGTCTGATCCCAAGAGTCCGCCCGAAGAACAGGAAGTGTCTGCTAAAACAGAGCAGGC
TGTTAACAAAGACAAGAAGGCAGAGGAGAAAAAGCGTGTGCTACTTCAGCAAGAAAAGATTATTGCAAGA
GTGAGTATTGATAACAGAACTCGAGCCTTAGTTCAGGCCTTAAGAAGAACAGCCGACCCAAAGCTCTGTA
TTACTAGGGTTGAAGAACTGACTTTTCATCTTCTAGAATTTCCTGAAGGAAAAGGAGTGGCTATCAAGGA
AAAAATTATTCCATATTTATTACGGCTGAGACAAGTTAAGGATGAAACTCTTCAGGCTGCAGTTAGAGAA
ATTTTGGCTTTAATTGGTTATGTAGATCCAGTGAAAGGCAGAGGAATCCGAATCCTCACCATTGATGGTG
GAGGAACAAGAGGTGTGGTTGCTCTCCAGACTCTGAGGAAGTTGGTTGAACTTACTCAGAAGCCGATTCA
TCAGCTTTTTGATTACATCTGTGGAGTAAGCACAGGGGCCATATTAGCATTTATGCTGGGATTGTTTCAC
ATGCCGCTGGATGAATGTGAGGAACTCTATCGAAAGTTGGGCTCAGATGTGTTCACACAGAATGTCATTG
TCGGGACCGTCAAAATGAGTTGGAGCCATGCGTTTTATGACAGTAACACGTGGGAAAAGATCCTCAAGGA
TAGAATTGGATCTGCACTAATGATTGAAACAGCGAGAAACCCCGCATGTCCTAAGGTAGCTGCTATAAGT
ACCATAGTAAACAGAGGACAAACACCAAAAGCTTTTGTGTTCAGAAACTATGGTCATTTTCCTGGCACCA
ACTCTCACTATTTAGGAGGCTGTCAGTATAAAATGTGGCAGGCCATTAGAGCCTCATCAGCTGCTCCAGG
CTACTTTGCAGAGTACGCGCTGGGGAGTGATCTTCATCAAGATGGAGGTTTGCTTCTGAATAACCCTTCG
GCCTTGGCCCTTCACGAATGTAAATGCATCTGGCCAGATACGCCACTGGAGTGTATAGTATCCTTGGGCA
CAGGACGGTATGAGAGTGATGTGAGGAATACCTCAACATACACGAGCCTGAAGACCAAGCTCTCTAATGT
TATCAGCAGTGCTACAGATACAGAGGAAGTTCATATCATGCTTGATGGCCTGTTGCCTTCTGACACGTAC
TTTAGATTTAATCCTGTGATATGTGAAAACATACCCCTAGATGAAAGCCGGGATGAAAAACTGGACCAGC
TTCAGCTGGAAGGGATGAAGTATATAGAAAGAAATGATCAAAAGATGAAAAAAGTTGCAAAAATATTAAG
TCAAGAAAAAACAACTCTTCAGAAGATCAATGATTGGATAAAATTAAAAAGTGACATGTATGAAGGCCTT
CCATTTTTTTCAAAATTGTGA

Translation (776 aa):
MSINLTLDIYIYFLNNARSLCGKQRSKQLHFVCSKQYWRMNHVNVHREFHTSKKSCKWNRSEAHCSKHWH
SPSNHGLHFGIVRLSTSAPKGLTKVSIHMSRIKSTLNSVSKAIFGSQNEMVTRLAQFKPSSRILRKVSDK
GWLKQKNVKQAVESLKNYSDKSAGKNSLAEQKSYFADKEEDSGKHSLFHYTYGITTRFGESFSVLANHIN
SYFKSKGKMSQTKEDKQLQDKPDLEERKSSSPGPDTVADRPDSESPLEVKDKLSSPTQMPEAHPVSAKQS
IANFLSRPTEGVQALVGGYIGGLVPKLKSDPKSPPEEQEVSAKTEQAVNKDKKAEEKKRVLLQQEKIIAR
VSIDNRTRALVQALRRTADPKLCITRVEELTFHLLEFPEGKGVAIKEKIIPYLLRLRQVKDETLQAAVRE
ILALIGYVDPVKGRGIRILTIDGGGTRGVVALQTLRKLVELTQKPIHQLFDYICGVSTGAILAFMLGLFH
MPLDECEELYRKLGSDVFTQNVIVGTVKMSWSHAFYDSNTWEKILKDRIGSALMIETARNPACPKVAAIS
TIVNRGQTPKAFVFRNYGHFPGTNSHYLGGCQYKMWQAIRASSAAPGYFAEYALGSDLHQDGGLLLNNPS
ALALHECKCIWPDTPLECIVSLGTGRYESDVRNTSTYTSLKTKLSNVISSATDTEEVHIMLDGLLPSDTY
FRFNPVICENIPLDESRDEKLDQLQLEGMKYIERNDQKMKKVAKILSQEKTTLQKINDWIKLKSDMYEGL
PFFSKL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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