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Report for CCDS21875.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21875.1 Public Mus musculus 7 Ctf1 23 108 98 CCDS HistoryNCBI Gene:13019Re-query CCDS DB by CCDS ID:21875.1Re-query CCDS DB by GeneID:13019See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21875.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047393.6 ENSMUSP00000049161.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047393.6Link to Ensembl Protein Viewer:ENSMUSP00000049161.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000047393Re-query CCDS DB by Protein ID:ENSMUSP00000049161
Original member NCBI NM_007795.2 NP_031821.1 Updated not alive Link to Nucleotide Sequence:NM_007795.2Link to Protein Sequence:NP_031821.1Re-query CCDS DB by Nucleotide ID:NM_007795Re-query CCDS DB by Protein ID:NP_031821
Current member NCBI NM_007795.3 NP_031821.1 Accepted alive Link to Nucleotide Sequence:NM_007795.3Link to Protein Sequence:NP_031821.1Re-query CCDS DB by Nucleotide ID:NM_007795Re-query CCDS DB by Protein ID:NP_031821Link to BLAST:NP_031821.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031821.1 203 Q60753 203 100% 0 0

Chromosomal Locations for CCDS 21875.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 127712755 127712779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127713925 127714043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127717004 127717471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGAGCCAGAGGGAGGGAAGTCTGGAAGACCACCAGACTGACTCCTCAATCTCATTCCTACCCCATTTGG
AG
GCCAAGATCCGCCAGACACACAACCTTGCCCGCCTCCTGACCAAATATGCAGAACAACTTCTGGAGGA
A
TACGTGCAGCAACAGGGAGAGCCCTTTGGGCTGCCGGGCTTCTCACCACCGCGGCTGCCGCTGGCCGGC
CTG
AGTGGCCCGGCTCCGAGCCATGCAGGGCTACCGGTGTCCGAGCGGCTGCGGCAGGATGCAGCCGCCC
TG
AGTGTGCTGCCCGCGCTGTTGGATGCCGTCCGCCGCCGCCAGGCGGAGCTGAACCCGCGCGCCCCGCG
C
CTGCTGCGGAGCCTGGAGGACGCAGCCCGCCAGGTTCGGGCCCTGGGCGCCGCGGTGGAGACAGTGCTG
GCC
GCGCTGGGCGCTGCAGCCCGCGGGCCCGGGCCAGAGCCCGTCACCGTCGCCACCCTCTTCACGGCCA
AC
AGCACTGCAGGCATCTTCTCAGCCAAGGTGCTGGGGTTCCACGTGTGCGGCCTCTATGGCGAGTGGGT
G
AGCCGCACAGAGGGCGACCTGGGCCAGCTGGTGCCAGGGGGCGTCGCCTGA


Translation (203 aa):
MSQREGSLEDHQTDSSISFLPHLEAKIRQTHNLARLLTKYAEQLLEEYVQQQGEPFGLPGFSPPRLPLAG
L
SGPAPSHAGLPVSERLRQDAAALSVLPALLDAVRRRQAELNPRAPRLLRSLEDAARQVRALGAAVETVL
A
ALGAAARGPGPEPVTVATLFTANSTAGIFSAKVLGFHVCGLYGEWVSRTEGDLGQLVPGGVA




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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