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Report for CCDS20220.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20220.1 Public Mus musculus 6 Il12rb2 23 108 98 CCDS HistoryNCBI Gene:16162Re-query CCDS DB by CCDS ID:20220.1Re-query CCDS DB by GeneID:16162See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20220.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018485.3 ENSMUSP00000010605.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018485.3Link to Ensembl Protein Viewer:ENSMUSP00000010605.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000018485Re-query CCDS DB by Protein ID:ENSMUSP00000010605
Original member Current member NCBI NM_008354.4 NP_032380.1 Accepted alive Link to Nucleotide Sequence:NM_008354.4Link to Protein Sequence:NP_032380.1Re-query CCDS DB by Nucleotide ID:NM_008354Re-query CCDS DB by Protein ID:NP_032380Link to BLAST:NP_032380.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032380.1 874 P97378 874 100% 0 0

Chromosomal Locations for CCDS 20220.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 67292203 67292736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67295212 67295311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67298149 67298239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67298908 67299045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67303460 67303618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67303699 67303797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67308958 67309158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67316191 67316407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67336687 67336766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67351239 67351389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67354725 67354867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67356582 67356775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67357676 67357790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67360493 67360819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67361875 67361950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2625 nt):
ATGGCACAGACTGTTAGAGAATGCTCATTGGCACTTCTTTTTTTGTTCATGTGGCTGCTGATTAAAGCAA
ATATAGATGTGTGCAAGCTTGGCACTGTGACCGTCCAGCCTGCCCCTGTGATTCCTCTTGGGTCAGCTGC
CAATATTTCCTGCTCCTTGAATCCCAAGCAAGGCTGTTCACATTATCCCAGTTCTAACGAATTAATCCTC
TTAAAGTTTGTCAATGATGTCCTTGTTGAAAATCTCCATGGCAAGAAAGTCCATGACCACACTGGTCACT
CCTCCACTTTTCAAGTCACCAACCTGTCCCTTGGTATGACCTTGTTTGTCTGCAAGCTAAACTGTAGCAA
CTCTCAAAAGAAGCCACCAGTCCCAGTATGTGGGGTGGAGATCTCAGTTGGTGTTGCTCCAGAGCCACCT
CAAAACATATCATGTGTCCAGGAAGGAGAAAATGGAACTGTGGCCTGTTCCTGGAACTCTGGAAAAGTTA
CTTATCTGAAAACCAATTACACTTTACAGTTAAGTGGACCAAACAATCTGACCTGTCAGAAACAATGTTT
TTCTGACAATCGTCAGAATTGCAATCGCCTGGATCTTGGGATCAATCTAAGCCCTGATTTAGCTGAATCC
AGGTTCATAGTCCGTGTTACTGCCATCAACGATCTTGGAAATTCTTCTTCACTTCCGCATACGTTCACGT
TCTTGGACATAGTGATCCCTCTTCCTCCGTGGGACATCAGAATCAACTTTCTAAATGCTTCTGGGAGCAG
AGGTACACTGCAGTGGGAAGATGAGGGGCAAGTGGTACTCAATCAACTCAGATATCAGCCTCTTAACAGC
ACGTCCTGGAACATGGTCAATGCTACAAATGCCAAAGGAAAATATGACCTGCGAGATCTGAGACCGTTTA
CAGAATATGAATTTCAAATCTCCTCTAAGCTACATCTCTCTGGAGGAAGTTGGAGTAATTGGAGTGAGTC
ACTGAGAACACGAACACCAGAGGAAGAGCCTGTTGGGATATTAGACATCTGGTACATGAAACAAGACATC
GACTATGACAGACAGCAGATCTCTCTTTTCTGGAAGAGTCTGAATCCATCAGAGGCAAGGGGGAAGATCC
TCCACTATCAGGTGACGTTACAAGAGGTGACAAAGAAAACAACACTGCAGAATACTACAAGACACACCTC
CTGGACCAGGGTCATCCCCCGAACTGGGGCTTGGACGGCATCAGTGTCTGCAGCCAACTCAAAAGGCGCT
TCTGCACCCACTCACATTAACATAGTGGACCTATGTGGCACTGGGTTGCTGGCTCCTCACCAGGTCTCTG
CAAAGTCGGAGAACATGGACAACATTCTAGTGACCTGGCAGCCTCCTAAGAAAGCTGATTCTGCTGTTCG
GGAGTACATAGTGGAATGGAGAGCTCTCCAACCAGGGAGCATCACGAAGTTTCCCCCACACTGGCTGCGG
ATCCCCCCGGACAACATGTCTGCTCTGATTTCAGAGAACATAAAGCCCTATATCTGTTATGAAATCAGGG
TGCATGCACTGTCAGAGAGCCAAGGAGGGTGCAGCTCCATCCGGGGTGACTCCAAGCACAAAGCACCAGT
GAGTGGCCCTCACATTACTGCCATCACAGAGAAAAAGGAACGCCTTTTCATTTCCTGGACCCACATTCCA
TTCCCGGAGCAAAGGGGCTGCATCCTCCATTACAGAATATACTGGAAAGAACGAGACTCGACAGCACAAC
CTGAGCTCTGCGAAATTCAGTACCGACGCTCTCAAAACTCACATCCAATAAGCAGCCTACAGCCCAGGGT
GACATATGTCCTATGGATGACAGCTGTGACAGCTGCTGGTGAAAGTCCCCAAGGAAATGAAAGGGAATTT
TGTCCACAGGGCAAAGCCAACTGGAAAGCATTCGTGATATCAAGCATTTGCATCGCTATCATCACGGTGG
GCACGTTCTCAATTCGTTACTTCCGGCAAAAGGCATTTACTCTCCTGTCTACTCTCAAACCTCAATGGTA
TAGCAGAACCATTCCAGATCCAGCAAACAGCACTTGGGTAAAGAAGTATCCCATTCTGGAGGAGAAGATC
CAGCTACCTACGGATAATCTCCTGATGGCATGGCCCACTCCTGAAGAGCCTGAGCCCCTGATCATCCATG
AAGTCCTCTACCACATGATCCCAGTTGTCAGACAACCATATTACTTCAAAAGAGGCCAAGGATTCCAAGG
CTACTCTACCTCCAAGCAAGATGCAATGTATATTGCCAATCCACAAGCTACAGGAACTCTCACAGCTGAG
ACCAGACAACTAGTGAACCTATACAAGGTGCTAGAAAGCAGAGACCCTGACTCAAAACTGGCCAACCTGA
CCAGCCCCTTGACAGTCACCCCAGTGAACTACCTTCCTAGCCATGAAGGCTATTTACCCTCCAACATAGA
AGATCTGTCACCACATGAGGCTGACCCAACTGATTCTTTTGACCTGGAGCATCAACATATTTCTCTTTCC
ATTTTTGCATCAAGTTCTCTCCGCCCACTCATCTTCGGTGGTGAGCGGCTGACTCTAGATCGGTTAAAGA
TGGGCTATGACTCCCTCATGAGTAATGAGGCTTGA

Translation (874 aa):
MAQTVRECSLALLFLFMWLLIKANIDVCKLGTVTVQPAPVIPLGSAANISCSLNPKQGCSHYPSSNELIL
LKFVNDVLVENLHGKKVHDHTGHSSTFQVTNLSLGMTLFVCKLNCSNSQKKPPVPVCGVEISVGVAPEPP
QNISCVQEGENGTVACSWNSGKVTYLKTNYTLQLSGPNNLTCQKQCFSDNRQNCNRLDLGINLSPDLAES
RFIVRVTAINDLGNSSSLPHTFTFLDIVIPLPPWDIRINFLNASGSRGTLQWEDEGQVVLNQLRYQPLNS
TSWNMVNATNAKGKYDLRDLRPFTEYEFQISSKLHLSGGSWSNWSESLRTRTPEEEPVGILDIWYMKQDI
DYDRQQISLFWKSLNPSEARGKILHYQVTLQEVTKKTTLQNTTRHTSWTRVIPRTGAWTASVSAANSKGA
SAPTHINIVDLCGTGLLAPHQVSAKSENMDNILVTWQPPKKADSAVREYIVEWRALQPGSITKFPPHWLR
IPPDNMSALISENIKPYICYEIRVHALSESQGGCSSIRGDSKHKAPVSGPHITAITEKKERLFISWTHIP
FPEQRGCILHYRIYWKERDSTAQPELCEIQYRRSQNSHPISSLQPRVTYVLWMTAVTAAGESPQGNEREF
CPQGKANWKAFVISSICIAIITVGTFSIRYFRQKAFTLLSTLKPQWYSRTIPDPANSTWVKKYPILEEKI
QLPTDNLLMAWPTPEEPEPLIIHEVLYHMIPVVRQPYYFKRGQGFQGYSTSKQDAMYIANPQATGTLTAE
TRQLVNLYKVLESRDPDSKLANLTSPLTVTPVNYLPSHEGYLPSNIEDLSPHEADPTDSFDLEHQHISLS
IFASSSLRPLIFGGERLTLDRLKMGYDSLMSNEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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