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Report for CCDS36680.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36680.1 Public Mus musculus 13 Tgfbi 23 108 98 CCDS HistoryNCBI Gene:21810Re-query CCDS DB by CCDS ID:36680.1Re-query CCDS DB by GeneID:21810See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36680.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045173.9 ENSMUSP00000037719.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045173.9Link to Ensembl Protein Viewer:ENSMUSP00000037719.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000045173Re-query CCDS DB by Protein ID:ENSMUSP00000037719
Original member Current member NCBI NM_009369.5 NP_033395.1 Accepted alive Link to Nucleotide Sequence:NM_009369.5Link to Protein Sequence:NP_033395.1Re-query CCDS DB by Nucleotide ID:NM_009369Re-query CCDS DB by Protein ID:NP_033395Link to BLAST:NP_033395.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033395.1 683 P82198 683 100% 0 0

Chromosomal Locations for CCDS 36680.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 56609647 56609780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56614240 56614338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56623560 56623624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56625200 56625360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56625650 56625814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56626034 56626180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56627914 56628055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56629618 56629830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56630544 56630681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56631230 56631375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56632050 56632186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56632859 56632989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56635566 56635690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56636566 56636668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56637138 56637217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56638021 56638045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56638717 56638757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2052 nt):
ATGGCGCTCCTCATGCGACTGCTGACCCTCGCTCTGGCACTGTCTGTGGGCCCCGCTGGGACCCTTGCAG
GTCCCGCCAAGTCACCCTACCAGCTGGTGCTGCAGCATAGCCGGCTCCGGGGTCGCCAGCACGGCCCCAA
TGTATGTGCTGTGCAGAAGGTCATTGGCACCAACAAGAAATACTTCACCAACTGCAAGCAGTGGTACCAG
AGGAAGATCTGCGGCAAGTCGACAGTCATCAGTTATGAGTGCTGTCCTGGATATGAAAAGGTCCCAGGAG
AGAAAGGTTGCCCAGCAGCTCTTCCGCTCTCAAATCTGTATGAGACCATGGGAGTTGTGGGATCGACCAC
CACACAGCTGTATACAGACCGCACAGAAAAGCTGAGGCCTGAGATGGAGGGACCCGGAAGCTTCACCATC
TTTGCTCCTAGCAATGAGGCCTGGTCTTCCTTGCCTGCGGAAGTGCTGGACTCCCTGGTGAGCAACGTCA
ACATCGAACTGCTCAATGCTCTCCGCTACCACATGGTGGACAGGCGGGTCCTGACCGATGAGCTCAAGCA
CGGCATGACCCTCACCTCCATGTACCAGAATTCCAACATCCAGATCCATCACTATCCCAATGGGATTGTA
ACTGTTAACTGTGCCCGGCTGCTGAAGGCTGACCACCATGCGACCAACGGCGTGGTGCATCTCATTGACA
AGGTCATTTCCACCATCACCAACAACATCCAGCAGATCATTGAAATCGAGGACACCTTTGAGACACTTCG
GGCCGCCGTGGCTGCATCAGGACTCAATACCGTGCTGGAGGGCGACGGCCAGTTCACACTCTTGGCCCCA
ACCAACGAGGCCTTTGAGAAGATCCCTGCCGAGACCTTGAACCGCATCCTGGGTGACCCAGAGGCACTGA
GAGACCTGCTAAACAACCACATCCTGAAGTCAGCCATGTGTGCTGAGGCCATTGTAGCTGGAATGTCCAT
GGAGACCCTGGGGGGCACCACACTGGAGGTGGGCTGCAGTGGGGACAAGCTCACCATCAACGGGAAGGCT
GTCATCTCCAACAAAGACATCCTGGCCACCAACGGTGTCATTCATTTCATTGATGAGCTGCTTATCCCAG
ATTCAGCCAAGACACTGCTTGAGCTGGCTGGGGAATCTGACGTCTCCACTGCCATTGACATCCTCAAACA
AGCTGGCCTCGATACTCATCTCTCTGGGAAAGAACAGTTGACCTTCCTGGCCCCCCTGAATTCTGTGTTC
AAAGATGGTGTCCCTCGCATCGACGCCCAGATGAAGACTTTGCTTCTGAACCACATGGTCAAAGAACAGT
TGGCCTCCAAGTATCTGTACTCTGGACAGACACTGGACACGCTGGGTGGCAAAAAGCTGCGAGTCTTTGT
TTATCGAAATAGCCTCTGCATTGAAAACAGCTGCATTGCTGCCCATGATAAGAGGGGACGGTTTGGGACC
CTGTTCACCATGGACCGGATGTTGACACCCCCAATGGGGACAGTTATGGATGTCCTGAAGGGAGACAATC
GTTTTAGCATGCTGGTGGCCGCCATCCAGTCTGCAGGACTCATGGAGATCCTCAACCGGGAAGGGGTCTA
CACTGTTTTTGCTCCCACCAATGAAGCGTTCCAAGCCATGCCTCCAGAAGAACTGAACAAACTCTTGGCA
AATGCCAAGGAACTTACCAACATCCTGAAGTACCACATTGGTGATGAAATCCTGGTTAGCGGAGGCATCG
GGGCCCTGGTGCGGCTGAAGTCTCTCCAAGGGGACAAACTGGAAGTCAGCTCGAAAAACAATGTAGTGAG
TGTCAATAAGGAGCCTGTTGCCGAAACCGACATCATGGCCACAAACGGTGTGGTCTATGCCATCAACACT
GTTCTGCAGCCGCCAGCCAACCGACCACAAGAACGAGGAGATGAGCTGGCAGACTCTGCCCTTGAAATCT
TCAAACAGGCGTCAGCGTATTCCAGGGCTGCCCAGAGGTCTGTGCGACTTGCCCCTGTCTATCAGCGGTT
ACTGGAGAGGATGAAGCATTAG

Translation (683 aa):
MALLMRLLTLALALSVGPAGTLAGPAKSPYQLVLQHSRLRGRQHGPNVCAVQKVIGTNKKYFTNCKQWYQ
RKICGKSTVISYECCPGYEKVPGEKGCPAALPLSNLYETMGVVGSTTTQLYTDRTEKLRPEMEGPGSFTI
FAPSNEAWSSLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKHGMTLTSMYQNSNIQIHHYPNGIV
TVNCARLLKADHHATNGVVHLIDKVISTITNNIQQIIEIEDTFETLRAAVAASGLNTVLEGDGQFTLLAP
TNEAFEKIPAETLNRILGDPEALRDLLNNHILKSAMCAEAIVAGMSMETLGGTTLEVGCSGDKLTINGKA
VISNKDILATNGVIHFIDELLIPDSAKTLLELAGESDVSTAIDILKQAGLDTHLSGKEQLTFLAPLNSVF
KDGVPRIDAQMKTLLLNHMVKEQLASKYLYSGQTLDTLGGKKLRVFVYRNSLCIENSCIAAHDKRGRFGT
LFTMDRMLTPPMGTVMDVLKGDNRFSMLVAAIQSAGLMEILNREGVYTVFAPTNEAFQAMPPEELNKLLA
NAKELTNILKYHIGDEILVSGGIGALVRLKSLQGDKLEVSSKNNVVSVNKEPVAETDIMATNGVVYAINT
VLQPPANRPQERGDELADSALEIFKQASAYSRAAQRSVRLAPVYQRLLERMKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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