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Report for CCDS24661.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24661.1 Public Mus musculus 11 Sar1b 23 108 98 CCDS HistoryNCBI Gene:66397Re-query CCDS DB by CCDS ID:24661.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24661.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020653.5 ENSMUSP00000020653.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020653.5Link to Ensembl Protein Viewer:ENSMUSP00000020653.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000020653Re-query CCDS DB by Protein ID:ENSMUSP00000020653
Original member Current member NCBI NM_025535.2 NP_079811.1 Accepted alive Link to Nucleotide Sequence:NM_025535.2Link to Protein Sequence:NP_079811.1Re-query CCDS DB by Nucleotide ID:NM_025535Re-query CCDS DB by Protein ID:NP_079811Link to BLAST:NP_079811.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079811.1 198 Q9CQC9 198 100% 0 0

Chromosomal Locations for CCDS 24661.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 51777504 51777561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51779689 51779808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51782772 51782837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51788150 51788253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51789197 51789328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51791327 51791443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGTCCTTCATATTTGACTGGATTTACAGTGGTTTCAGCAGTGTGCTGCAGTTTCTAGGATTGTATAAAA
AGTCTGGTAAACTGGTATTCCTTGGATTGGATAATGCCGGGAAAACAACTTTGCTACACATGCTGAAAGA
TGACAGGCTCGGGCAGCACGTCCCAACGCTACATCCCACTTCAGAAGAGCTTACTATTGCTGGCATGACG
TTTACAACTTTTGATCTGGGTGGGCACGTGCAAGCCCGAAGAGTATGGAAAAACTACCTTCCTGCTATCA
ATGGCATTGTATTTCTTGTGGATTGTGCAGACCATGAAAGGCTGTTAGAATCAAAAGAAGAACTTGATTC
ACTAATGACAGATGAAACCATTGCCAACGTGCCTATTCTAATTCTTGGAAATAAGATCGACAGACCTGAA
GCCATCAGTGAAGAGAGGTTACGAGAGATGTTTGGTTTATATGGTCAGACAACAGGAAAGGGTAGTGTGT
CACTGAAGGAGCTGAACGCCCGGCCTCTGGAAGTGTTCATGTGCAGTGTGCTAAAAAGGCAGGGCTATGG
AGAAGGCTTCCGCTGGATGGCGCAGTACATCGATTAG

Translation (198 aa):
MSFIFDWIYSGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT
FTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE
AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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