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Report for CCDS21731.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21731.1 Public Mus musculus 7 Eif3f 23 108 98 CCDS HistoryNCBI Gene:66085Re-query CCDS DB by CCDS ID:21731.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21731.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033342.6 ENSMUSP00000033342.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033342.6Link to Ensembl Protein Viewer:ENSMUSP00000033342.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000033342Re-query CCDS DB by Protein ID:ENSMUSP00000033342
Original member Current member NCBI NM_025344.2 NP_079620.2 Accepted alive Link to Nucleotide Sequence:NM_025344.2Link to Protein Sequence:NP_079620.2Re-query CCDS DB by Nucleotide ID:NM_025344Re-query CCDS DB by Protein ID:NP_079620Link to BLAST:NP_079620.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079620.2 361 Q9DCH4 361 100% 0 0

Chromosomal Locations for CCDS 21731.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 108934432 108934807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 108937746 108937816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 108938036 108938115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 108938409 108938546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 108940190 108940281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 108940644 108940780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 108940894 108941007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 108941461 108941538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGGCTTCTCCGGCCGTACCGGCTAATGTCCCTCCTGCCACTGCAGCCGCAGCCCCGGCGCCGGTCGTCA
CCGCAGCCCCGGCTTCAGCCCCGACCCCATCCACGCCAGCTCCGACACCGGCTGCGACTCCCGCTGCGTC
CCCGGCGCCCGTCTCGTCTGATCCTGCTGTAGCTGCGCCTGCAGCCCCGGGCCAGACCCCAGCCTCCGCG
CCAGCCCCAGCGCAGACGCCGGCGCCTTCGCAGCCCGGGCCCGCCCTCCCGGGGCCTTTCCCGGGCGGCC
GCGTGGTCAGGCTACACCCCGTCATTTTGGCCTCGATCGTGGACAGCTACGAACGCCGCAACGAGGGAGC
TGCCCGAGTTATTGGAACCCTGTTGGGAACTGTTGACAAGCACTCGGTAGAAGTCACCAACTGCTTTTCG
GTGCCACACAATGAGTCAGAAGATGAAGTGGCTGTTGACATGGAATTTGCTAAGAATATGTATGAATTAC
ATAAAAAAGTCTCCCCAAATGAGCTCATCCTAGGCTGGTATGCCACAGGCCATGACATCACAGAACACTC
AGTGCTGATCCATGAGTACTACAGCAGGGAGGCCCCGAACCCCATTCACCTCACGGTGGACACAGGTCTC
CAGCATGGGCGCATGAGCATCAAGGCCTATGTCAGCACTTTAATGGGTGTCCCTGGGAGGACCATGGGAG
TGATGTTCACACCTCTCACAGTGAAGTACGCGTATTATGACACTGAACGCATTGGAGTTGACCTCATCAT
GAAGACGTGTTTTAGCCCCAACCGGGTGATTGGACTCTCAAGTGACTTACAACAAGTGGGAGGGGCCTCA
GCTCGCATCCAGGATGCTCTAAGCACTGTATTACAGTATGCTGAGGATGTGCTGTCTGGGAAAGTGTCTG
CTGACAACACGGTGGGCCGCTTCTTGATGAGCCTTGTCAACCAAGTACCCAAGATAGTTCCTGATGACTT
TGAGACCATGCTCAACAGCAACATCAATGACCTGCTGATGGTGACCTACCTGGCCAATCTCACCCAGTCA
CAGATTGCCCTCAACGAGAAACTTGTAAACCTGTGA

Translation (361 aa):
MASPAVPANVPPATAAAAPAPVVTAAPASAPTPSTPAPTPAATPAASPAPVSSDPAVAAPAAPGQTPASA
PAPAQTPAPSQPGPALPGPFPGGRVVRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFS
VPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTGL
QHGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGAS
ARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQS
QIALNEKLVNL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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