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Report for CCDS56675.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56675.1 Public Mus musculus 10 Rmnd1 23 108 98 CCDS HistoryNCBI Gene:66084Re-query CCDS DB by CCDS ID:56675.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56675.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042251.10 ENSMUSP00000043355.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042251.10Link to Ensembl Protein Viewer:ENSMUSP00000043355.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000042251Re-query CCDS DB by Protein ID:ENSMUSP00000043355
Original member NCBI NM_001358796.1 NP_001345725.1 Updated not alive Link to Nucleotide Sequence:NM_001358796.1Link to Protein Sequence:NP_001345725.1Re-query CCDS DB by Nucleotide ID:NM_001358796Re-query CCDS DB by Protein ID:NP_001345725
Current member NCBI NM_001358796.2 NP_001345725.1 Accepted alive Link to Nucleotide Sequence:NM_001358796.2Link to Protein Sequence:NP_001345725.1Re-query CCDS DB by Nucleotide ID:NM_001358796Re-query CCDS DB by Protein ID:NP_001345725Link to BLAST:NP_001345725.1
Original member NCBI NM_025343.6 NP_079619.4 Updated not alive Link to Nucleotide Sequence:NM_025343.6Link to Protein Sequence:NP_079619.4Re-query CCDS DB by Nucleotide ID:NM_025343Re-query CCDS DB by Protein ID:NP_079619
Current member NCBI NM_025343.7 NP_079619.4 Accepted alive Link to Nucleotide Sequence:NM_025343.7Link to Protein Sequence:NP_079619.4Re-query CCDS DB by Nucleotide ID:NM_025343Re-query CCDS DB by Protein ID:NP_079619Link to BLAST:NP_079619.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345725.1 450 Q8CI78 450 100% 0 0
NP_079619.4 450 Q8CI78 450 100% 0 0

Chromosomal Locations for CCDS 56675.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 4403469 4403501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4403874 4403990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4407805 4407925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4410713 4410789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4411667 4411731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4413309 4413415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4414543 4414643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4417153 4417192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4418556 4418631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4422082 4422190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4427171 4427677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1353 nt):
ATGCCATCCAGGCTTCTCCACACCCTGGCAAGTTTACACAGCATATCAGCAAAGGCTCATCAGTGCCAGA
GACTTACTTGGCTTACATTAAGACCACTTAGGAAATCTGAAAGTACAACATGCCACAATGGCCTGACAAT
ACAGCAACATTTACACTCATTCTTTCCAAGTATAACAGCTGACAGTTTGAATAAGCCAGAGATCCTGGAA
ATGAGCCGGATAACATCAGACACAAGCAGACTCTTTCCGTTAAATGCTGTCCATTGGTTGGACGGCAAAG
AACACTGGCCAAGCATGCACCCCTTTGGGACTCACAGGAGCATGACCCACAAACCAAATCTCTTGTGTTC
TAAGTGGTTTATAAAAGCAGTAAAGAGGCATCACTCATCTGTATCAAATGAAGCACTTGTTCCCAAACAA
GACCTTCCGCAGATCAAGAGGCCGCTGAAAGCATCCCGGACCCGGCAGCCATCCAGGACCAACCTTCCAG
ATCTGTCTGTGAATGAGGACCTGATGCAGTGCACAGCATTTGCAACCGCAGATGAGTATCACCTGGGAAG
TCTGTCTCAAGAGCTGGTCTCCTGTGGCTATGTGGAAGTGACAAGCCTGCCTAGAGATGCAGCAAATATT
TTGGTGATGGGTGTGGAAAGTTCTGCAAAAGAAGGTGATCCCGGAACAATATTCTTGTTCAGGGAAGGAG
CTGCTGTGTTCTGGAATGTAAAAGAAAAAACTATGAAGCACGTGATGCAAGTTCTAGAGAGACACGAAAC
CCAGCCCTATGAAGTGGCTCTCGTTCACTGGGAGAACGAAGAACTCAACTACATAAAGACAGAGGGACAA
TCAAAACTGCACAGAGGGGAAATCAAGCTAAACTCTGAGCTGGACTTGGATGACGCCATTCTAGAGAAAT
TTGCGTTCTCCAACGCTCTCTGCCTGTCAGTGAAGCTGGCTATTTGGGAAGCAACCCTGGACAAATTTAT
TGAGTCTATTCAGTCCATTCCAGAGGCATTAAAAGCTGGGAAGAAAGTCAAACTGTCTCATAAAGAAGTT
ATGCAGAAAATGGGTGAGCTCTTTGCCCTCAGGCACCGAATAAACCTGAGCTCAGATTTCTTGATCACCC
CTGACTTCTACTGGGACAGAGCAAACCTGGAAGAGCTTTATGACAAGACCTGCCAGTTCCTTAGCATCAC
GCGAAGAGTTAAGGTCATGAATGAAAAACTGCAGCACTGCATGGAACTAACAGACCTAATGCGGAATCAC
CTCAATGAGAAGCGAGCACTCCGCTTGGAGTGGATGATCGTCATCCTCATCACCATTGAGGTAATGTTTG
AGCTGGGGAGAGTCTTCTTCTGA

Translation (450 aa):
MPSRLLHTLASLHSISAKAHQCQRLTWLTLRPLRKSESTTCHNGLTIQQHLHSFFPSITADSLNKPEILE
MSRITSDTSRLFPLNAVHWLDGKEHWPSMHPFGTHRSMTHKPNLLCSKWFIKAVKRHHSSVSNEALVPKQ
DLPQIKRPLKASRTRQPSRTNLPDLSVNEDLMQCTAFATADEYHLGSLSQELVSCGYVEVTSLPRDAANI
LVMGVESSAKEGDPGTIFLFREGAAVFWNVKEKTMKHVMQVLERHETQPYEVALVHWENEELNYIKTEGQ
SKLHRGEIKLNSELDLDDAILEKFAFSNALCLSVKLAIWEATLDKFIESIQSIPEALKAGKKVKLSHKEV
MQKMGELFALRHRINLSSDFLITPDFYWDRANLEELYDKTCQFLSITRRVKVMNEKLQHCMELTDLMRNH
LNEKRALRLEWMIVILITIEVMFELGRVFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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