NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39552.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39552.1 Public Mus musculus 6 Rab7 23 108 98 CCDS HistoryNCBI Gene:19349Re-query CCDS DB by CCDS ID:39552.1Re-query CCDS DB by GeneID:19349See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39552.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095048.5 ENSMUSP00000092658.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095048.5Link to Ensembl Protein Viewer:ENSMUSP00000092658.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095048Re-query CCDS DB by Protein ID:ENSMUSP00000092658
Original member Current member EBI ENSMUST00000113596.7 ENSMUSP00000109226.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113596.7Link to Ensembl Protein Viewer:ENSMUSP00000109226.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113596Re-query CCDS DB by Protein ID:ENSMUSP00000109226
Original member Current member EBI ENSMUST00000113597.7 ENSMUSP00000109227.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113597.7Link to Ensembl Protein Viewer:ENSMUSP00000109227.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113597Re-query CCDS DB by Protein ID:ENSMUSP00000109227
Original member Current member EBI ENSMUST00000113598.7 ENSMUSP00000109228.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113598.7Link to Ensembl Protein Viewer:ENSMUSP00000109228.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113598Re-query CCDS DB by Protein ID:ENSMUSP00000109228
Original member Current member EBI ENSMUST00000113600.9 ENSMUSP00000109230.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113600.9Link to Ensembl Protein Viewer:ENSMUSP00000109230.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113600Re-query CCDS DB by Protein ID:ENSMUSP00000109230
Original member Current member NCBI NM_001293652.1 NP_001280581.1 Accepted alive Link to Nucleotide Sequence:NM_001293652.1Link to Protein Sequence:NP_001280581.1Re-query CCDS DB by Nucleotide ID:NM_001293652Re-query CCDS DB by Protein ID:NP_001280581Link to BLAST:NP_001280581.1
Original member Current member NCBI NM_001293653.1 NP_001280582.1 Accepted alive Link to Nucleotide Sequence:NM_001293653.1Link to Protein Sequence:NP_001280582.1Re-query CCDS DB by Nucleotide ID:NM_001293653Re-query CCDS DB by Protein ID:NP_001280582Link to BLAST:NP_001280582.1
Original member Current member NCBI NM_001293654.1 NP_001280583.1 Accepted alive Link to Nucleotide Sequence:NM_001293654.1Link to Protein Sequence:NP_001280583.1Re-query CCDS DB by Nucleotide ID:NM_001293654Re-query CCDS DB by Protein ID:NP_001280583Link to BLAST:NP_001280583.1
Original member Current member NCBI NM_001293655.1 NP_001280584.1 Accepted alive Link to Nucleotide Sequence:NM_001293655.1Link to Protein Sequence:NP_001280584.1Re-query CCDS DB by Nucleotide ID:NM_001293655Re-query CCDS DB by Protein ID:NP_001280584Link to BLAST:NP_001280584.1
Original member Current member NCBI NM_009005.3 NP_033031.2 Accepted alive Link to Nucleotide Sequence:NM_009005.3Link to Protein Sequence:NP_033031.2Re-query CCDS DB by Nucleotide ID:NM_009005Re-query CCDS DB by Protein ID:NP_033031Link to BLAST:NP_033031.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001280581.1 207 P51150 207 100% 0 0
NP_001280582.1 207 P51150 207 100% 0 0
NP_001280583.1 207 P51150 207 100% 0 0
NP_001280584.1 207 P51150 207 100% 0 0
NP_033031.2 207 P51150 207 100% 0 0

Chromosomal Locations for CCDS 39552.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 88000435 88000530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88004171 88004299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88004993 88005211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88012307 88012433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88013638 88013690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (624 nt):
ATGACCTCTAGGAAGAAAGTGTTGCTGAAGGTCATCATCCTGGGGGACTCTGGTGTTGGAAAGACCTCTC
TCATGAACCAGTATGTGAACAAGAAGTTCAGTAACCAGTACAAAGCCACAATAGGAGCGGACTTTCTGAC
CAAGGAGGTGATGGTGGACGACAGACTTGTTACCATGCAGATCTGGGACACAGCCGGTCAAGAACGGTTC
CAGTCTCTTGGTGTGGCCTTCTACAGAGGTGCAGATTGCTGTGTTCTGGTGTTTGATGTGACTGCCCCCA
ACACTTTCAAAACCCTCGACAGCTGGAGAGACGAGTTTCTCATCCAGGCCAGCCCCCGGGATCCCGAGAA
CTTCCCTTTTGTTGTGTTGGGAAACAAGATTGACCTGGAAAACAGACAAGTGGCCACAAAGAGGGCACAG
GCTTGGTGCTACAGCAAAAACAACATTCCTTACTTCGAGACCAGTGCCAAGGAGGCCATCAATGTGGAGC
AGGCCTTCCAGACAATTGCTCGGAATGCCCTTAAACAGGAAACAGAAGTGGAACTGTACAATGAATTCCC
TGAACCCATCAAACTGGACAAGAATGACCGGGCCAAGGCCTCCGCAGAAAGCTGCAGTTGTTGA

Translation (207 aa):
MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF
QSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQ
AWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKASAESCSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH