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Report for CCDS23215.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23215.1 Public Mus musculus 9 Ptpn9 23 108 98 CCDS HistoryNCBI Gene:56294Re-query CCDS DB by CCDS ID:23215.1Re-query CCDS DB by GeneID:56294See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23215.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034832.7 ENSMUSP00000034832.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034832.7Link to Ensembl Protein Viewer:ENSMUSP00000034832.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000034832Re-query CCDS DB by Protein ID:ENSMUSP00000034832
Original member Current member NCBI NM_019651.2 NP_062625.2 Accepted alive Link to Nucleotide Sequence:NM_019651.2Link to Protein Sequence:NP_062625.2Re-query CCDS DB by Nucleotide ID:NM_019651Re-query CCDS DB by Protein ID:NP_062625Link to BLAST:NP_062625.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062625.2 593 O35239 593 100% 0 0

Chromosomal Locations for CCDS 23215.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 56995594 56995656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57019904 57020047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57022208 57022297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57022959 57023083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57027376 57027481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57033106 57033216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57036483 57036811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57044375 57044468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57048191 57048257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57056714 57056792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57057711 57057861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57059854 57060061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57060945 57061159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1782 nt):
ATGGAGCCGGCGACCGCGCCCCGGCCGGACATGGCGCCGGAGCTGACCCCCGAGGAGGAGCAGGCTACCA
AGCAGTTTCTTGAAGAGATCAACAAGTGGACAGTACAGTATAATGTTTCTCCACTCTCCTGGAATGTGGC
TGTCAAGTTCCTCATGGCCAGAAAGTTTGATGTGCTCCGTGCTGTAGAGTTGTTCCACTGCTACAGAGAA
ACAAGAAGAAAGGAAGGCATTGTGAAGCTGAAACCTCATGAGGAGCCTCTCCGTTCTGAGATCCTCAGTG
GGAAGTTTACTATCTTGAATGTTCGAGACCCAACTGGAGCCTCCATTGCCCTCTTCACTGCCAGGTTACA
CCACCCCCACAAGTCTGCCCAGCACGTGGTGCTCCAAGCTCTGTTTTATCTGCTGGACAGAGCTGTGGAC
AGCTTTGAAACTCAAAGAAATGGACTGGTGTTCATCTATGACATGTGCGGGTCTAATTATGCCAACTTTG
AGCTAGATCTTGGCAAGAAAGTCCTAAACCTGCTGAAGGGAGCATTTCCAGCTCGACTGAAGAAAGTGCT
GATTGTAGGAGCACCCATATGGTTCCGAGTGCCCTATTCAATCATCAGCCTGCTCTTGAAGGATAAAGTC
CGGGAAAGGATTCAGATATTAAAGACATCTGAAGTTACCCAGCACCTGCCTAGGGAGTGCCTTCCAGAAA
ATCTGGGTGGGTACGTCAAAATTGACCTGGCTACTTGGAATTTCCAGTTCCTGCCCCAAGTAAACGGCCA
CCCAGATCCCTTCGATGAGATCATCCTGTCTTCCCTACCTCCTGCCTTAGACTGGGACTCAGTACATGTT
CCAGGTCCTCATGCCATGACCATCCAAGAGTTGGTAGACTATGTTAACACCAGGCAAAAGCGGGGCATCT
ATGAGGAGTATGAAGACATTCGTCGTGAGAACCCTGTTGGCACTTTCCACTGTTCCATGTCTCCAGGAAA
CCTAGAAAAAAACAGATATGGAGATGTACCCTGCCTAGACCAAACCCGAGTGAAGCTGACAAAACGGAGT
GGCCACACTCAGACAGATTACATCAATGCCAGTTTCATGGATGGTTACAAGCAGAAGAATGCTTATATTG
GTACACAAGGTCCTTTGGAGAACACCTATCGTGACTTCTGGCTTATGGTTTGGGAGCAAAAAGTTTTGGT
GATTGTCATGACTACCCGCTTTGAGGAAGGCGGCAGGAGAAAATGTGGCCAGTACTGGCCTTTAGAAAAA
GACTCCCGGATCCGATTTGGCTTCCTCACGGTGACTAATCTAGGAGTGGAAAACATGAACCATTATAAGA
AAACAACTCTAGAAATTCACAACACAGAGGAGCGGCAGAAACGCCAGGTTACCCACTTCCAGTTCCTAAG
CTGGCCAGATTATGGTGTCCCTTCCTCAGCTGCTTCCCTCATTGACTTCCTGAGAGTGGTCAGAAACCAG
CAGAGTATGGCTGTAGGCAACCTGGGAGCTCGCTCCAAAGGGCAGTGCCCTGAGCCACCCATTGTGGTCC
ACTGCAGTGCTGGCATCGGCAGGACAGGTACCTTCTGCTCACTGGACATCTGCCTGGCACAGCTGGAGGA
GCTTGGCACCCTTAATGTGTTCCAGACGGTGTCACGCATGAGGACCCAAAGGGCCTTCAGTATCCAGACC
CCTGAGCAGTACTACTTTTGCTACAAGGCAATTCTGGAGTTTGCAGAGAGGGAAGGCATGGTTCCCTCTG
GTCACAGCCTGTTGGCCATGGACGGTCAATAA

Translation (593 aa):
MEPATAPRPDMAPELTPEEEQATKQFLEEINKWTVQYNVSPLSWNVAVKFLMARKFDVLRAVELFHCYRE
TRRKEGIVKLKPHEEPLRSEILSGKFTILNVRDPTGASIALFTARLHHPHKSAQHVVLQALFYLLDRAVD
SFETQRNGLVFIYDMCGSNYANFELDLGKKVLNLLKGAFPARLKKVLIVGAPIWFRVPYSIISLLLKDKV
RERIQILKTSEVTQHLPRECLPENLGGYVKIDLATWNFQFLPQVNGHPDPFDEIILSSLPPALDWDSVHV
PGPHAMTIQELVDYVNTRQKRGIYEEYEDIRRENPVGTFHCSMSPGNLEKNRYGDVPCLDQTRVKLTKRS
GHTQTDYINASFMDGYKQKNAYIGTQGPLENTYRDFWLMVWEQKVLVIVMTTRFEEGGRRKCGQYWPLEK
DSRIRFGFLTVTNLGVENMNHYKKTTLEIHNTEERQKRQVTHFQFLSWPDYGVPSSAASLIDFLRVVRNQ
QSMAVGNLGARSKGQCPEPPIVVHCSAGIGRTGTFCSLDICLAQLEELGTLNVFQTVSRMRTQRAFSIQT
PEQYYFCYKAILEFAEREGMVPSGHSLLAMDGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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