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Report for CCDS22316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22316.1 Public Mus musculus 8 Sap30 23 108 98 CCDS HistoryNCBI Gene:60406Re-query CCDS DB by CCDS ID:22316.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22316.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034022.3 ENSMUSP00000034022.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034022.3Link to Ensembl Protein Viewer:ENSMUSP00000034022.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000034022Re-query CCDS DB by Protein ID:ENSMUSP00000034022
Original member NCBI NM_021788.2 NP_068560.1 Updated not alive Link to Nucleotide Sequence:NM_021788.2Link to Protein Sequence:NP_068560.1Re-query CCDS DB by Nucleotide ID:NM_021788Re-query CCDS DB by Protein ID:NP_068560
Current member NCBI NM_021788.3 NP_068560.1 Accepted alive Link to Nucleotide Sequence:NM_021788.3Link to Protein Sequence:NP_068560.1Re-query CCDS DB by Nucleotide ID:NM_021788Re-query CCDS DB by Protein ID:NP_068560Link to BLAST:NP_068560.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068560.1 220 O88574 220 100% 0 0

Chromosomal Locations for CCDS 22316.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 57482928 57483050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57485042 57485140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57485510 57485635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57487252 57487566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (663 nt):
ATGAACGGCTTCACTCCGGAGGAGATGAGCCGAGGCGGGGACGCGGCCGCCGCCGTGGCCGCGGTGGTCG
CTGCTGCGGCTGCCGCCGCCTCGGCGGGGAATGGGAACGCAGCCGGCGGTGGGGCAGAGGTACCCGGTGC
CGGTGCAGTGTCAGCTTCTGGGCCACCTGGAGCGGCCGGTCCCGGCCCTGGGCAACTCTGTTGTTTGCGG
GAGGACGGTGAGCGGTGCGGGCGCGCGGCAGGCAACGCCAGCTTCAGCAAAAGGATCCAGAAGAGCATCT
CTCAGAAGAAGGTGAAGATCGAGCTGGATAAGAGTGCAAGGCATCTTTACATTTGTGACTATCATAAGAA
CTTAATTCAGAGCGTTCGGAACAGAAGGAAGAGGAAAGGAAGCGATGATGATGGGGGAGACTCGCCTGTT
CAGGACATCGACACTCCAGAGGTTGATTTGTACCAATTACAAGTAAATACACTTAGAAGATACAAAAGAC
ACTTCAAGCTTCCAACCAGACCAGGTCTAAATAAAGCACAACTTGTTGAGATAGTTGGTTGCCACTTTAA
GTCTATTCCAGTGAACGAAAAAGACACCTTAACATGTTTCATCTACTCAGTGAGGAACGACAAGAACAAA
TCGGATCTCAAGGCCGACAGTGGTGTTCACTAG

Translation (220 aa):
MNGFTPEEMSRGGDAAAAVAAVVAAAAAAASAGNGNAAGGGAEVPGAGAVSASGPPGAAGPGPGQLCCLR
EDGERCGRAAGNASFSKRIQKSISQKKVKIELDKSARHLYICDYHKNLIQSVRNRRKRKGSDDDGGDSPV
QDIDTPEVDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVEIVGCHFKSIPVNEKDTLTCFIYSVRNDKNK
SDLKADSGVH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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