NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS71685.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71685.1 Public Mus musculus 5 Cux1 23 108 98 CCDS HistoryNCBI Gene:13047Re-query CCDS DB by CCDS ID:71685.1Re-query CCDS DB by GeneID:13047See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71685.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000176216.8 ENSMUSP00000135054.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176216.8Link to Ensembl Protein Viewer:ENSMUSP00000135054.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176216Re-query CCDS DB by Protein ID:ENSMUSP00000135054
Original member NCBI NM_001291238.1 NP_001278167.1 Updated not alive Link to Nucleotide Sequence:NM_001291238.1Link to Protein Sequence:NP_001278167.1Re-query CCDS DB by Nucleotide ID:NM_001291238Re-query CCDS DB by Protein ID:NP_001278167
Current member NCBI NM_001291238.2 NP_001278167.1 Accepted alive Link to Nucleotide Sequence:NM_001291238.2Link to Protein Sequence:NP_001278167.1Re-query CCDS DB by Nucleotide ID:NM_001291238Re-query CCDS DB by Protein ID:NP_001278167Link to BLAST:NP_001278167.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278167.1 678 P70403-1 678 99.41% 0 4

Chromosomal Locations for CCDS 71685.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 136248911 136248980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136249168 136249232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136250524 136250604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136251371 136251427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136252543 136252626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136254067 136254183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136256232 136256344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136256800 136256866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136257913 136258040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136314307 136314403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136315999 136316047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136319781 136319839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136326750 136326938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136332624 136332728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136340089 136340137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136360002 136360068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136363259 136363335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136370118 136370241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136373322 136373459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136392315 136392393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136407980 136408027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136485741 136485851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136567178 136567240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2037 nt):
ATGGCGGCCAATGTGGGATCGATGTTTCAATATTGGAAGCGCTTTGATTTACAGCAGCTGCAGAGAGAAC
TTGATGCCACCGCAACAGTATTGGCAAACAGGCAAGATGAGAGCGAACAGTCCAGAAAGCGGCTCATTGA
GCAGAGCCGAGAATTCAAGAAGAACACTCCAGAGGATTTACGCAAGCAGGTAGCACCACTGCTAAAGAGC
TTCCAAGGGGAGATTGATGCACTGAGTAAAAGAAGCAAAGAAGCAGAGGCAGCCTTCTTGACTGTGTACA
AGAGACTAATTGATGTTCCAGATCCGGTACCAGCCCTGGACGTCGGGCAACAGCTGGAAATAAAAGTGCA
GCGTCTACACGACATTGAAACAGAGAACCAGAAACTTAGGGAAACACTAGAAGAGTACAACAAGGAGTTT
GCTGAAGTGAAAAATCAAGAGGTTACGATAAAAGCACTTAAGGAGAAAATCCGAGAATACGAGCAGACCC
TGAAGAGTCAGGCCGAGACCATTGCTCTGGAGAAAGAGCAGAAGCTACAAAATGATTTTGCAGAGAAGGA
GAGAAAGCTGCAAGAGACACAGATGTCCACCACCTCAAAACTGGAGGAAGCTGAGCACAAACTCCAGACT
CTGCAAACAGCCCTGGAAAAAACTCGAACAGAATTATTTGACCTGAAAACCAAATATGATGAAGAAACTA
CTGCAAAGGCCGATGAGATCGAGATGATCATGACCGACCTTGAACGAGCCAACCAGAGGGCAGAGGTGGC
ACAGAGAGAAGCAGAGACTTTAAGGGAACAGCTCTCATCGGCCAACCACTCTCTCCAACTGGCCTCGCAG
ATCCAGAAGGCTCCAGATGTGGAGCAGGCCATAGAGGTGCTGACCCGATCCAGCCTAGAAGTAGAGTTGG
CTGCCAAAGAGCGGGAGATCGCCCAGCTGGTGGAAGATGTGCAGCGACTCCAGGCCAGCCTCACCAAGCT
ACGTGAGAATTCCGCCAGCCAGATCTCACAGCTGGAGCAGCAACTGAATGCCAAGAATAGCACACTCAAA
CAACTGGAAGAAAAACTCAAAGGCCAGGCTGACTATGAAGAAGTGAAGAAAGAGCTGAACACCCTGAAGT
CCATGGAGTTTGCACCATCGGAGGGAGCAGGGACACAGGACTCTACCAAGCCCCTGGAGGTTTTACTCCT
GGAGAAGAACCGCTCGCTGCAGTCCGAGAATGCCACGCTGCGCATCTCCAACAGTGACCTGAGCGGGCGC
TGTGCGGAGCTGCAGATCCACCTCACTGAGGCCACAGCCAAGGCTGTTGAGCAGAAGGAGCTGATCGCTC
GCTTGGAGCAGGACCTCAGCACCATCCAGTCCATCCAACGGCCTGATGCCGAGGGAGCTTCCGAGCAAGG
CCTAGAGAAGATTCCAGAACCCATCAAGGAAGCTACAGCTCTGTTCTATGGACCCTCAATGTCATCCAGT
GGGACCCTTCCAGAAGGCCAGGTGGACTCCCTGCTTTCCATCATCTCCAGCCAAAGGGAACGTTTCCGCA
CCCGGAACCAAGAGCTGGAAGCCGAGAGCCGCATGGCCCAGCACACCATCCAGGCCCTGCAGAGCGAGCT
GGACAGCCTGCGCGCTGACAACATCAAACTCTTTGAGAAGATCAAGTTCCTGCAGAGTTACCCTGGCAGA
GGTATCGGCAGTGACGACACGGAGCTGCGATACTCCTCCCAATACGAGGAACGCCTGGACCCTTTCTCCT
CCTTCAGCAAGAGGGAGCGGCAGAGGAAGTACCTGGGCCTGAGCCCCTGGGACAAGGCCACACTTGGCAT
GGGCCGTCTGATTCTCTCCAACAAGATGGCCCGCACCATCAGCTTCTTTTACACCTTGTTCCTGCACTGC
CTGGTCTTTCTGGTGCTGTACAAGCTGGCATGGAGTGAGAGTGTGGAGAGAGACTGTGCTGCCACCTGCG
CCAAGAAGTTCGCCGATCATCTGCACAAATTCCACGAGAGTGACAACGGAGCAGCAGCTGGTGACTTATG
GCAGTGA

Translation (678 aa):
MAANVGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDLRKQVAPLLKS
FQGEIDALSKRSKEAEAAFLTVYKRLIDVPDPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEF
AEVKNQEVTIKALKEKIREYEQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQT
LQTALEKTRTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ
IQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLNAKNSTLK
QLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAGTQDSTKPLEVLLLEKNRSLQSENATLRISNSDLSGR
CAELQIHLTEATAKAVEQKELIARLEQDLSTIQSIQRPDAEGASEQGLEKIPEPIKEATALFYGPSMSSS
GTLPEGQVDSLLSIISSQRERFRTRNQELEAESRMAQHTIQALQSELDSLRADNIKLFEKIKFLQSYPGR
GIGSDDTELRYSSQYEERLDPFSSFSKRERQRKYLGLSPWDKATLGMGRLILSNKMARTISFFYTLFLHC
LVFLVLYKLAWSESVERDCAATCAKKFADHLHKFHESDNGAAAGDLWQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH