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Report for CCDS27333.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27333.1 Public Mus musculus 14 Gpr180 23 108 98 CCDS HistoryNCBI Gene:58245Re-query CCDS DB by CCDS ID:27333.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27333.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022728.3 ENSMUSP00000022728.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022728.3Link to Ensembl Protein Viewer:ENSMUSP00000022728.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000022728Re-query CCDS DB by Protein ID:ENSMUSP00000022728
Original member Current member NCBI NM_021434.5 NP_067409.2 Accepted alive Link to Nucleotide Sequence:NM_021434.5Link to Protein Sequence:NP_067409.2Re-query CCDS DB by Nucleotide ID:NM_021434Re-query CCDS DB by Protein ID:NP_067409Link to BLAST:NP_067409.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067409.2 441 Q8BPS4 441 100% 0 0

Chromosomal Locations for CCDS 27333.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 118137193 118137340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 118139737 118139895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 118148085 118148285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 118153569 118153749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 118153877 118153926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 118157897 118158054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 118159993 118160184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 118161557 118161634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 118162589 118162747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1326 nt):
ATGGGCGGCCTGCGGCTGCTGGCGGTAGCCCTCACGTGCAGCTGCTGGTGGCCGCAGGGCGGCCAGGGCA
AGACCCTGCGTGGCAGCTTCAGCAGCGCCGCGGCCCGCGACGCCCAGGGCCAGAGCATCGGCCATTTCGA
GTTCCACGGTGACCATGCTCTTCTGTGTGTCAGAATCAACAACGTAGCAGTGGCTGTTGGAAAAGAAGCT
AAACTCTACCTGTTCCAAGCCCAGGAATGGCTGAAGCTGCTGGAGAGCAGCCCCGGCTACAGCTGCAGTG
AGCGGCTAGCCCGAGCTCAGCTGACAGTGACAGTGACCCAGACGGAGCACAACCTCACAGTGTCCCAGCT
GCCCGCTCCCCAGACATGGCGAGTGTTCTATGCCGACAAGTTCACCTGCAGGGATGACTCAGAGAGCCCC
CAGGGGGAGGAGATCCCCTTTGAAATGGTGCTCCTCAACCCGGACGCCGAGGGAAACCCACTGGATCATT
TTAGCGCCAGAGAGTCCGGGCTCCACGAGTTCTTTTTCCTCCTCGTCCTAGTGTACTTTGTGACTGCGTG
CATCTATGCGCAGTCTCTGTGGCAGGCTATGAAGAAGGGAGGACCCATGCACACCATCTTAAAGGTCCTC
ACCACTGCACTGCTGCTTCAAGCTGCTTCAGCCTTAGCTAATTACATCCACTTGTCCAGGTACTCCAGAG
ATGGGCTAGGAGTGCCTCTCATAGGAAGCCTGGCAGAAGTTTTTGACATTGCCTCCCAAATTCAGATGCT
GTACCTGCTTCTGAGCCTGTGTATGGGCTGGACAATAGTGCGGATGAAGAAGTCGCAGAGCAGACCGCTC
CAGTGGGACTCGACACCCGCGTCCACGGGCATCGCAGTCTTCATCGTCATCACACAGAGCATTTTGCTAC
TCTGGGAGCAGTTTGAAGACACCAGTCACCACAGCGCACATTCACACCGCAGCTTAGCCGGGCTCTTGCT
GATTGTCTTACGGATCTGCCTGGCGCTGTCGCTGGGCTGCGGACTCTACCAGGTCATCACAGTGGAGAGG
AGCGCGCTCAAGAGAGAGTTCTACATCACGTTTGCCAAGGGCTGCATCCTGTGGTTCTTGTGCCAGCCAG
CGCTCGCATGCATTGCTGTCGCTTTTAATGACTACCAAAGAGATAAGCTTATCACAGTAGGTGTCATCCT
GTGTCAGGCCGTGGCCATGGTCATTCTGTACAGACTTTTCCTGTCCCACAGTCTTTACTGGGAGGTCTCC
TCGCTCTCCTCAGTAACGCTACCACTGACCATCTCGTCTGCACACAGAGGGCGCCCTCATTTCTGA

Translation (441 aa):
MGGLRLLAVALTCSCWWPQGGQGKTLRGSFSSAAARDAQGQSIGHFEFHGDHALLCVRINNVAVAVGKEA
KLYLFQAQEWLKLLESSPGYSCSERLARAQLTVTVTQTEHNLTVSQLPAPQTWRVFYADKFTCRDDSESP
QGEEIPFEMVLLNPDAEGNPLDHFSARESGLHEFFFLLVLVYFVTACIYAQSLWQAMKKGGPMHTILKVL
TTALLLQAASALANYIHLSRYSRDGLGVPLIGSLAEVFDIASQIQMLYLLLSLCMGWTIVRMKKSQSRPL
QWDSTPASTGIAVFIVITQSILLLWEQFEDTSHHSAHSHRSLAGLLLIVLRICLALSLGCGLYQVITVER
SALKREFYITFAKGCILWFLCQPALACIAVAFNDYQRDKLITVGVILCQAVAMVILYRLFLSHSLYWEVS
SLSSVTLPLTISSAHRGRPHF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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