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Report for CCDS25358.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25358.1 Public Mus musculus 11 Gsdma 23 108 98 CCDS HistoryNCBI Gene:57911Re-query CCDS DB by CCDS ID:25358.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25358.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017348.2 ENSMUSP00000017348.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017348.2Link to Ensembl Protein Viewer:ENSMUSP00000017348.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000017348Re-query CCDS DB by Protein ID:ENSMUSP00000017348
Original member Current member NCBI NM_021347.4 NP_067322.1 Accepted alive Link to Nucleotide Sequence:NM_021347.4Link to Protein Sequence:NP_067322.1Re-query CCDS DB by Nucleotide ID:NM_021347Re-query CCDS DB by Protein ID:NP_067322Link to BLAST:NP_067322.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067322.1 446 Q9EST1 446 100% 0 0

Chromosomal Locations for CCDS 25358.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 98666061 98666274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98666451 98666631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98669619 98669784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98670757 98670853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98671318 98671365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98671731 98671757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98672295 98672315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98672976 98673130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98673606 98673720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98675873 98675946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98676174 98676416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1341 nt):
ATGACTATGTTTGAGAATGTCACCCGGGCCCTGGCTAGACAGCTGAACCCTCGAGGGGATCTGACACCCC
TAGACAGCCTCATCGACTTCAAACGCTTCCATCCCTTCTGCCTGGTGCTGAGGAAGAGGAAGAGCACACT
GTTCTGGGGAGCCCGCTATGTGCACACCGACTACACTCTCCTGGATGTGCTGGAGCCGGGCAGCTCCCCC
TCAGATCCGACAGACAGTGGCAACTTTAGCTTTAAGAATATGCTGGATGCTCGAGTAGAGGGAGATGTGG
ATGTGCCAAAGACAGTGAAGGTAAAGGGGACTGCGGGTCTGTCACGGAGCAGCACACTGGAGGTGCAGAC
GCTCAGCGTGGCTCCCACGGCTCTGGAGAACTTGCACAAGGAGAGGAAACTGTCAGCAGACCACCCATTC
CTGAAGGAGATGCGGGAACGCGGGGAGAACCTCTATGTGGTGATGGAGGTGGTGGAAACCCTACAGGAAG
TCACTCTGGAGCGAGCCGGCAAGGCAGAGGGCTGCTTCTCTCTCCCCTTCTTTGCCCCACTGGGACTACA
GGGATCCGTGAACCACAAGGAGGCTGTAACCATCCCCAAGGGCTGTGTTCTGGCCTATCGAGTGAGACAA
CTGATGGTCAACGGCAAAGATGAGTGGGGCATTCCACACATTTGCAATGACAGCATGCAAACCTTCCCTC
CTGGAGAAAAGCCAGGAGAAGGGAAGTTCATATTGATCCAGGCATCTGATGTTGGGGAGATGCACGAAGA
CTTCAAGACATTAAAGGAAGAGGTTCAGCGAGAGACTCAGGAAGTGGAGAAGTTAAGTCCAGTGGGGCGA
AGCTCACTACTCACTTCCCTCAGCCATCTCCTAGGAAAGAAGAAAGAGCTCCAGGACCTTGAGCAGACGC
TTGAAGGGGCTCTAGACAAGGGACACGAAGTGACCCTGGAAGCACTCCCCAAAGATGTCCTGCTGTCAAA
GGACGCTATGGACGCCATCCTTTACTTCCTCGGGGCTCTGACAGTGCTAAGTGAAGCCCAACAGAAGCTT
CTAGTAAAATCCTTGGAGAAAAAGATCCTACCGGTGCAACTGAAGCTGGTTGAAAGCACCATGGAGAAGA
ACTTCCTGCAAGATAAAGAGGGTGTTTTCCCCCTGCAACCTGATCTGCTCTCCTCCCTCGGGGAGGAGGA
ACTGATCCTAACAGAAGCACTGGTGGGACTAAGCGGCCTGGAAGTCCAGAGATCAGGCCCCCAGTACACG
TGGGATCCGGACACGCTCCCCCACCTTTGTGCCCTCTATGCTGGCCTCTCCCTCCTTCAACTGCTAAGCA
AGAATTCCTAA

Translation (446 aa):
MTMFENVTRALARQLNPRGDLTPLDSLIDFKRFHPFCLVLRKRKSTLFWGARYVHTDYTLLDVLEPGSSP
SDPTDSGNFSFKNMLDARVEGDVDVPKTVKVKGTAGLSRSSTLEVQTLSVAPTALENLHKERKLSADHPF
LKEMRERGENLYVVMEVVETLQEVTLERAGKAEGCFSLPFFAPLGLQGSVNHKEAVTIPKGCVLAYRVRQ
LMVNGKDEWGIPHICNDSMQTFPPGEKPGEGKFILIQASDVGEMHEDFKTLKEEVQRETQEVEKLSPVGR
SSLLTSLSHLLGKKKELQDLEQTLEGALDKGHEVTLEALPKDVLLSKDAMDAILYFLGALTVLSEAQQKL
LVKSLEKKILPVQLKLVESTMEKNFLQDKEGVFPLQPDLLSSLGEEELILTEALVGLSGLEVQRSGPQYT
WDPDTLPHLCALYAGLSLLQLLSKNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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