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Report for CCDS71547.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71547.1 Public Mus musculus 5 Slc26a5 23 108 98 CCDS HistoryNCBI Gene:80979Re-query CCDS DB by CCDS ID:71547.1Re-query CCDS DB by GeneID:80979See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71547.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115176.7 ENSMUSP00000110830.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115176.7Link to Ensembl Protein Viewer:ENSMUSP00000110830.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115176Re-query CCDS DB by Protein ID:ENSMUSP00000110830
Original member Current member NCBI NM_001289787.1 NP_001276716.1 Accepted alive Link to Nucleotide Sequence:NM_001289787.1Link to Protein Sequence:NP_001276716.1Re-query CCDS DB by Nucleotide ID:NM_001289787Re-query CCDS DB by Protein ID:NP_001276716Link to BLAST:NP_001276716.1

Chromosomal Locations for CCDS 71547.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 21811148 21811341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21813325 21813379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21813854 21814054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21814897 21815004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21815668 21815760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21816939 21817008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21819682 21819788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21820313 21820408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21821029 21821106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21821995 21822108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21823450 21823597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21831447 21831529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21834217 21834369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21837222 21837386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21837881 21838047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21846223 21846362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21847178 21847329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2124 nt):
ATGGATCATGCTGAAGAAAATGAAATCCCTGCAGAGACCCAGAGGTACTACGTGGAAAGGCCCATCTTCA
GTCATCCTGTCCTCCAAGAGAGGCTGCACGTCAAGGACAAAGTCACAGAGTCCATTGGAGATAAGCTGAA
GCAGGCATTCACGTGTACTCCTAAAAAAATAAGAAACATCATTTACATGTTCCTGCCTATCACTAAGTGG
CTGCCAGCATATAAATTCAAGGAGTATGTGTTAGGTGACTTGGTCTCGGGCATAAGCACTGGGGTACTCC
AGCTTCCCCAAGGTCCTTTTGCTGTTATTAGCTTGATGATTGGAGGTGTGGCCGTCCGGTTAGTACCAGA
TGATATTGTCATCCCAGGAGGAGTAAATGCAACCAACGGGACAGAAGCCAGAGATGCACTAAGAGTGAAA
GTCGCCATGTCTGTTACCTTACTTTCAGGAATCATTCAGTTTTGCCTAGGTGTCTGTAGGTTTGGATTTG
TGGCCATATACCTCACGGAGCCATTGGTGCGAGGCTTTACCACTGCGGCTGCTGTCCACGTGTTCACGTC
CATGTTAAAATACCTGTTTGGGGTCAAAACAAAGCGGTACAGTGGAATCTTTTCAGTGGTGTATAGTACA
GTTGCTGTGTTGCAGAATGTTAAAAACCTCAACGTGTGTTCCCTAGGCGTCGGCCTGATGGTTTTTGGTT
TGCTGTTGGGTGGCAAGGAATTTAATGAGAGATTTAAAGAGAAATTGCCAGCACCCATTCCTCTAGAGTT
CTTTGCTGTGGTGATGGGGACTGGCATTTCTGCAGGATTTAACCTACATGAGTCCTACAGTGTGGATGTC
GTTGGAACACTTCCTCTGGGGCTACTTCCTCCGGCCAACCCAGACACCAGCCTGTTCCACCTGGTGTATG
TGGACGCCATTGCCATCGCCATCGTTGGATTTTCAGTGACGATCTCCATGGCCAAAACCTTGGCAAATAA
GCATGGCTACCAGGTTGATGGCAATCAGGAGCTCATTGCCTTGGGGATATGCAACTCCATTGGATCTCTC
TTCCAAACCTTCTCGATTTCCTGCTCCTTGTCTCGAAGCCTTGTTCAGGAAGGAACTGGAGGGAAAACAC
AGCTTGCAGGTTGTTTGGCCTCGTTGATGATTCTGTTGGTCATATTAGCCACCGGATTCCTCTTTGAGTC
GTTACCCCAGGCTGTCCTTTCCGCCATTGTGATCGTCAACCTGAAAGGAATGTTCATGCAGTTCTCAGAC
CTGCCTTTTTTCTGGAGAACCAGCAAAATAGAGCTGACCATCTGGCTGACCACCTTTGTGTCCTCCCTGT
TCCTCGGCTTGGACTACGGACTGATTACCGCCGTGATCATTGCTCTGCTCACAGTGATTTATAGAACACA
GAGTCCAAGCTACAAAGTCCTGGGGCAGCTCCCTGACACGGATGTGTACATTGACATAGATGCATATGAG
GAGGTGAAAGAAATTCCTGGAATAAAAATATTCCAAATAAATGCCCCAATTTACTATGCAAATAGCGACT
TGTATAGCAGCGCTTTAAAAAGAAAGACTGGAGTAAACCCAGCACTCATTATGGGAGCGAGAAGAAAGGC
CATGAGGAAGTACGCCAAGGAAGTTGGAAATGCCAACGTGGCCAATGCTACTGTTGTCAAAGTGGATGCA
GAAGTAGACGGAGAAAATGCTACAAAACCTGAAGAAGAGGATGATGAAGTCAAATTTCCCCCAATAGTCA
TCAAAACAACATTTCCTGAAGAGCTGCAGAGATTTTTGCCCCAGGGGGAAAATGTCCACACTGTCATTCT
AGACTTTACGCAGGTCAATTTTGTGGATTCTGTTGGAGTGAAAACTCTGGCCGGGATTGTGAAAGAATAT
GGAGATGTTGGAATTTATGTATATTTAGCAGGATGCAGCCCACAAGTTGTGAATGACCTCACCCGCAACA
ACTTTTTTGAAAATCCTGCCTTGAAAGAGCTTCTGTTCCACAGTATCCACGATGCAGTCCTGGGCAGCCA
AGTTCGGGAGGCAATGGCTGAACAAGAAGCCACAGCGTCACTTCCCCAGGAGGATATGGAGCCCAATGCC
ACACCCACCACCCCCGAGGCATAA

Translation (707 aa):
MDHAEENEIPAETQRYYVERPIFSHPVLQERLHVKDKVTESIGDKLKQAFTCTPKKIRNIIYMFLPITKW
LPAYKFKEYVLGDLVSGISTGVLQLPQGPFAVISLMIGGVAVRLVPDDIVIPGGVNATNGTEARDALRVK
VAMSVTLLSGIIQFCLGVCRFGFVAIYLTEPLVRGFTTAAAVHVFTSMLKYLFGVKTKRYSGIFSVVYST
VAVLQNVKNLNVCSLGVGLMVFGLLLGGKEFNERFKEKLPAPIPLEFFAVVMGTGISAGFNLHESYSVDV
VGTLPLGLLPPANPDTSLFHLVYVDAIAIAIVGFSVTISMAKTLANKHGYQVDGNQELIALGICNSIGSL
FQTFSISCSLSRSLVQEGTGGKTQLAGCLASLMILLVILATGFLFESLPQAVLSAIVIVNLKGMFMQFSD
LPFFWRTSKIELTIWLTTFVSSLFLGLDYGLITAVIIALLTVIYRTQSPSYKVLGQLPDTDVYIDIDAYE
EVKEIPGIKIFQINAPIYYANSDLYSSALKRKTGVNPALIMGARRKAMRKYAKEVGNANVANATVVKVDA
EVDGENATKPEEEDDEVKFPPIVIKTTFPEELQRFLPQGENVHTVILDFTQVNFVDSVGVKTLAGIVKEY
GDVGIYVYLAGCSPQVVNDLTRNNFFENPALKELLFHSIHDAVLGSQVREAMAEQEATASLPQEDMEPNA
TPTTPEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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