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Report for CCDS20066.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20066.1 Public Mus musculus 6 Zyx 23 108 98 CCDS HistoryNCBI Gene:22793Re-query CCDS DB by CCDS ID:20066.1Re-query CCDS DB by GeneID:22793See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20066.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164375.3 ENSMUSP00000126622.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164375.3Link to Ensembl Protein Viewer:ENSMUSP00000126622.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164375Re-query CCDS DB by Protein ID:ENSMUSP00000126622
Original member Current member EBI ENSMUST00000203652.2 ENSMUSP00000145451.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203652.2Link to Ensembl Protein Viewer:ENSMUSP00000145451.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203652Re-query CCDS DB by Protein ID:ENSMUSP00000145451
Original member NCBI NM_001289617.1 NP_001276546.1 Updated not alive Link to Nucleotide Sequence:NM_001289617.1Link to Protein Sequence:NP_001276546.1Re-query CCDS DB by Nucleotide ID:NM_001289617Re-query CCDS DB by Protein ID:NP_001276546
Current member NCBI NM_001289617.2 NP_001276546.1 Accepted alive Link to Nucleotide Sequence:NM_001289617.2Link to Protein Sequence:NP_001276546.1Re-query CCDS DB by Nucleotide ID:NM_001289617Re-query CCDS DB by Protein ID:NP_001276546Link to BLAST:NP_001276546.1
Original member NCBI NM_011777.3 NP_035907.1 Updated not alive Link to Nucleotide Sequence:NM_011777.3Link to Protein Sequence:NP_035907.1Re-query CCDS DB by Nucleotide ID:NM_011777Re-query CCDS DB by Protein ID:NP_035907
Current member NCBI NM_011777.4 NP_035907.1 Accepted alive Link to Nucleotide Sequence:NM_011777.4Link to Protein Sequence:NP_035907.1Re-query CCDS DB by Nucleotide ID:NM_011777Re-query CCDS DB by Protein ID:NP_035907Link to BLAST:NP_035907.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276546.1 564 Q62523 564 100% 0 0
NP_035907.1 564 Q62523 564 100% 0 0

Chromosomal Locations for CCDS 20066.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 42350269 42350476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42350946 42351148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42351270 42351362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42351475 42351969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42355917 42356037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42356162 42356331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42356432 42356610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42357313 42357433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42357852 42357956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1695 nt):
ATGGCGGCCCCCCGCCCGCCTCCCGCGATCTCCGTCTCCGTCTCGGCCCCCGCGTTTTACGCCCCGCAGA
AGAAGTTCGCCCCGGTTGTGGCCCCAAAGCCCAAAGTGAATCCTTTCCGGCCTGGGGACAGCGAGCCTCC
TGTAGCAGCCGGGGCCCAAAGAGCGCAGATGGGTCGGGTGGGCGAGATCCCACCACCACCCCCGGAAGAC
TTTCCTTTGCCCCCTCCTCCCCTTATTGGGGAGGGCGACGACTCAGAGGGTGCCCTGGGAGGTGCCTTCC
CACCTCCACCTCCCCCGATGATCGAGGAACCATTCCCCCCTGCTCCTCTGGAGGAGGACATCTTCCCCTC
CCCTCCACCTCCACTGGAGGAGGAGGGAGGGCCTGAGGCCCCTACCCAGCTCCCACCGCAGCCCAGGGAG
AAAGTGTGCAGTATTGACCTGGAGATTGACTCTCTGTCCTCACTGCTGGACGACATGACCAAGAACGATC
CCTTCAAAGCCCGGGTATCATCCGGATATGTACCCCCACCAGTTGCCACTCCATTTGTTCCCAAGCCTAG
TACCAAACCTGCCCCTGGGGGCACAGCACCCTTGCCTCCTTGGAAGACCCCTTCTAGCTCCCAGCCACCA
CCTCAGCCGCAGGCCAAGCCTCAGGTCCAGCTCCATGTCCAGCCTCAGGCCAAGCCCCATGTCCAACCCC
AGCCTGTGTCTTCTGCTAATACACAGCCCCGGGGTCCCCTTTCTCAGGCACCAACTCCAGCACCTAAGTT
TGCTCCAGTGGCTCCTAAATTTACTCCCGTGGTTTCCAAGTTCAGCCCTGGTGCTCCAAGTGGACCTGGG
CCACAGCCCAATCAAAAAATGGTGCCTCCGGATGCTCCTTCTTCTGTGAGCACAGGCTCCCCTCAGCCCC
CTAGCTTCACCTATGCTCAGCAGAAGGAGAAGCCCCTAGTTCAAGAGAAGCAGCACCCACAGCCTCCACC
AGCTCAAAACCAAAACCAGGTACGCTCTCCTGGAGGCCCAGGCCCCTTGACCCTGAAGGAGGTAGAGGAG
TTGGAGCAGCTGACCCAGCAGCTGATGCAGGACATGGAACACCCTCAGAGGCAGAGCGTGGCAGTGAATG
AGTCCTGTGGCAAATGCAATCAGCCACTGGCCCGTGCACAGCCTGCGGTTCGTGCACTGGGACAACTGTT
CCACATCACCTGCTTCACTTGCCATCAGTGTCAGCAGCAGCTGCAGGGACAGCAGTTCTATAGCCTGGAG
GGAGCACCATATTGTGAGGGCTGCTACACCGACACTTTGGAGAAGTGCAACACCTGTGGGCAGCCCATCA
CTGACCGCATGCTGAGGGCCACTGGCAAAGCCTACCACCCACAGTGCTTCACCTGTGTGGTCTGCGCCTG
TCCCCTGGAGGGCACCTCCTTCATTGTGGACCAGGCCAATCAGCCCCACTGTGTCCCTGACTATCACAAG
CAATACGCTCCAAGGTGCTCCGTCTGCTCGGAGCCAATCATGCCTGAGCCTGGCCGAGACGAGACTGTGC
GAGTAGTGGCGCTGGATAAGAACTTTCATATGAAGTGTTACAAGTGTGAGGACTGTGGGAAACCTCTGTC
CATTGAGGCAGATGACAACGGCTGTTTCCCTCTGGATGGCCACGTCCTTTGTCGGAAGTGCCACTCCGCT
AGAGCCCAGACCTGA

Translation (564 aa):
MAAPRPPPAISVSVSAPAFYAPQKKFAPVVAPKPKVNPFRPGDSEPPVAAGAQRAQMGRVGEIPPPPPED
FPLPPPPLIGEGDDSEGALGGAFPPPPPPMIEEPFPPAPLEEDIFPSPPPPLEEEGGPEAPTQLPPQPRE
KVCSIDLEIDSLSSLLDDMTKNDPFKARVSSGYVPPPVATPFVPKPSTKPAPGGTAPLPPWKTPSSSQPP
PQPQAKPQVQLHVQPQAKPHVQPQPVSSANTQPRGPLSQAPTPAPKFAPVAPKFTPVVSKFSPGAPSGPG
PQPNQKMVPPDAPSSVSTGSPQPPSFTYAQQKEKPLVQEKQHPQPPPAQNQNQVRSPGGPGPLTLKEVEE
LEQLTQQLMQDMEHPQRQSVAVNESCGKCNQPLARAQPAVRALGQLFHITCFTCHQCQQQLQGQQFYSLE
GAPYCEGCYTDTLEKCNTCGQPITDRMLRATGKAYHPQCFTCVVCACPLEGTSFIVDQANQPHCVPDYHK
QYAPRCSVCSEPIMPEPGRDETVRVVALDKNFHMKCYKCEDCGKPLSIEADDNGCFPLDGHVLCRKCHSA
RAQT


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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