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Report for CCDS78539.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78539.1 Public Mus musculus 1 Sox17 23 108 98 CCDS HistoryNCBI Gene:20671Re-query CCDS DB by CCDS ID:78539.1Re-query CCDS DB by GeneID:20671See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78539.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000192650.5 ENSMUSP00000142116.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000192650.5Link to Ensembl Protein Viewer:ENSMUSP00000142116.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000192650Re-query CCDS DB by Protein ID:ENSMUSP00000142116
Original member NCBI NM_001289465.1 NP_001276394.1 Updated not alive Link to Nucleotide Sequence:NM_001289465.1Link to Protein Sequence:NP_001276394.1Re-query CCDS DB by Nucleotide ID:NM_001289465Re-query CCDS DB by Protein ID:NP_001276394
Current member NCBI NM_001289465.2 NP_001276394.1 Accepted alive Link to Nucleotide Sequence:NM_001289465.2Link to Protein Sequence:NP_001276394.1Re-query CCDS DB by Nucleotide ID:NM_001289465Re-query CCDS DB by Protein ID:NP_001276394Link to BLAST:NP_001276394.1
Original member NCBI NM_001289466.1 NP_001276395.1 Updated not alive Link to Nucleotide Sequence:NM_001289466.1Link to Protein Sequence:NP_001276395.1Re-query CCDS DB by Nucleotide ID:NM_001289466Re-query CCDS DB by Protein ID:NP_001276395
Current member NCBI NM_001289466.2 NP_001276395.1 Accepted alive Link to Nucleotide Sequence:NM_001289466.2Link to Protein Sequence:NP_001276395.1Re-query CCDS DB by Nucleotide ID:NM_001289466Re-query CCDS DB by Protein ID:NP_001276395Link to BLAST:NP_001276395.1

Chromosomal Locations for CCDS 78539.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 4491716 4492668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 4493772 4493863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 4495136 4495155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGTCACCTCATGGATACAATGAGCAGCACCTCCAGACATCTGAATTTCAGCCTTCCTATTTCCCCAAGA
GGTCTTGGCGCCAGCGCCCGGCTCCAGCCAGTTTTCCCCAAGGCAAGTCTTGGAAGGCGTTGACCTTGGC
AGAGAAGCGGCCCTTCGTGGAAGAGGCCGAGCGGCTGCGCGTGCAGCATATGCAGGACCACCCCAACTAC
AAGTACCGGCCGCGGCGGCGCAAGCAGGTGAAGCGCATGAAGCGGGTGGAGGGAGGCTTCCTGCACGCTC
TCGTCGAGCCCCAGGCCGGCGCGCTTGGTCCCGAGGGCGGCCGCGTGGCCATGGATGGCCTGGGTCTGCC
TTTCCCGGAGCCGGGCTATCCGGCCGGTCCTCCGCTGATGTCTCCGCACATGGGCCCCCACTATCGGGAC
TGCCAGGGACTGGGCGCTCCCGCGCTCGACGGCTACCCTCTGCCCACTCCGGACACATCCCCGCTGGATG
GCGTGGAGCAGGACCCGGCTTTCTTTGCAGCCCCGCTGCCAGGGGACTGCCCGGCGGCCGGCACCTACAC
TTACGCTCCAGTCTCGGACTATGCAGTGTCCGTAGAGCCGCCCGCTGGCCCCATGCGAGTGGGGCCGGAC
CCCTCGGGCCCTGCGATGCCGGGGATCCTGGCGCCCCCCAGCGCTCTGCACCTGTACTACGGCGCGATGG
GCTCGCCCGCCGCAAGTGCGGGGCGCGGTTTCCACGCGCAACCCCAGCAGCCGCTGCAACCGCAGGCACC
GCCGCCGCCACCGCAGCAGCAGCACCCAGCGCACGGCCCCGGGCAACCTTCGCCCCCTCCCGAGGCTCTG
CCCTGCCGGGATGGCACGGAATCCAACCAGCCCACTGAGCTCCTAGGGGAGGTGGACCGCACGGAATTCG
AACAGTATCTGCCCTTTGTGTATAAGCCCGAGATGGGTCTTCCCTACCAGGGACACGACTGCGGAGTGAA
CCTCTCAGACAGCCACGGAGCCATTTCCTCCGTGGTGTCCGACGCTAGCTCAGCGGTCTACTATTGCAAC
TACCCCGACATTTGA

Translation (354 aa):
MSPHGYNEQHLQTSEFQPSYFPKRSWRQRPAPASFPQGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNY
KYRPRRRKQVKRMKRVEGGFLHALVEPQAGALGPEGGRVAMDGLGLPFPEPGYPAGPPLMSPHMGPHYRD
CQGLGAPALDGYPLPTPDTSPLDGVEQDPAFFAAPLPGDCPAAGTYTYAPVSDYAVSVEPPAGPMRVGPD
PSGPAMPGILAPPSALHLYYGAMGSPAASAGRGFHAQPQQPLQPQAPPPPPQQQHPAHGPGQPSPPPEAL
PCRDGTESNQPTELLGEVDRTEFEQYLPFVYKPEMGLPYQGHDCGVNLSDSHGAISSVVSDASSAVYYCN
YPDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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