NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS72089.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72089.1 Public Mus musculus 8 Cd209b 23 108 98 CCDS HistoryNCBI Gene:69165Re-query CCDS DB by CCDS ID:72089.1Re-query CCDS DB by GeneID:69165See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 72089.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000188386.1 ENSMUSP00000140695.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188386.1Link to Ensembl Protein Viewer:ENSMUSP00000140695.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188386Re-query CCDS DB by Protein ID:ENSMUSP00000140695
Original member Current member NCBI NM_001287211.1 NP_001274140.1 Accepted alive Link to Nucleotide Sequence:NM_001287211.1Link to Protein Sequence:NP_001274140.1Re-query CCDS DB by Nucleotide ID:NM_001287211Re-query CCDS DB by Protein ID:NP_001274140Link to BLAST:NP_001274140.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001274140.1 316 Q8CJ91-3 316 100% 0 0

Chromosomal Locations for CCDS 72089.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 3918677 3918827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3918920 3918982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3919950 3920059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3921340 3921491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3921983 3922069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3923295 3923381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3924210 3924296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3925355 3925435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3926552 3926638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3926747 3926792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGAGTGACTCCACAGAAGCCAAGATGCAGCCTCTTAGCTCCATGGACGATGATGAGTTGATGGTCAGCG
GCAGCAGGTATTCTATTAAAAGCTCCAGACTACGACCAAATTCTGGAATCAAGTGTTTGGCAGTCTCCAA
AACCCCAAATACCGAGAGGCAGAAGGAACAAGAGAAGATCCTCCAGGAACTGACCCAGCTGACAGATGAG
CTTACGTCCAGGATCCCCATCTCCCAAGGGAAGAATGAGTCCATGCAGGCGAAGATCACTGAGCAACTGA
TGCAGCTGAAAACTGAACTCTTGTCCAGGATTCCCATCTTCCAGGGGCAGAATGAGTCCATACAAGAGAA
GATCTCTGAGCAACTGATGCAGCTGAAGGCTGAACTTCTTTCCAAGATCTCCAGCTTCCCGGTAAAGGAT
GATTCTAAGCAGGAGAAGATCTACCAACAGCTGGTACAGATGAAGACTGAACTCTTCCGCCTGTGTCGAC
TCTGCCCCTGGGACTGGACATTCCTCCTAGGAAATTGTTACTTCTTCTCCAAGTCCCAGCGGAACTGGAA
TGACGCCGTCACAGCTTGCAAAGAAGTGAAGGCTCAACTAGTCATCATCAATAGTGATGAAGAGCAGACC
TTCCTGCAGCAGACTTCTAAGGCTAAAGGACCAACCTGGATGGGCCTGTCAGACCTGAAGAAGGAGGCCA
CGTGGCTCTGGGTAGATGGTTCTACTCTGTCATCCAGCAGACCCAGGCATGCCCCCATCTCCAGAGGAAG
GCCCATCTACAATATGCATTCTGGAAGGAGATTCCAGAAATATTGGAATAGAGGGGAGCCTAACAACATC
GGTGAGGAAGACTGTGTCGAATTTGCTGGGGATGGCTGGAATGACTCTAAATGTGAACTCAAAAAGTTCT
GGATCTGCAAGAAGTCTGCAACCCCATGCACTGAAGGCTAG

Translation (316 aa):
MSDSTEAKMQPLSSMDDDELMVSGSRYSIKSSRLRPNSGIKCLAVSKTPNTERQKEQEKILQELTQLTDE
LTSRIPISQGKNESMQAKITEQLMQLKTELLSRIPIFQGQNESIQEKISEQLMQLKAELLSKISSFPVKD
DSKQEKIYQQLVQMKTELFRLCRLCPWDWTFLLGNCYFFSKSQRNWNDAVTACKEVKAQLVIINSDEEQT
FLQQTSKAKGPTWMGLSDLKKEATWLWVDGSTLSSSRPRHAPISRGRPIYNMHSGRRFQKYWNRGEPNNI
GEEDCVEFAGDGWNDSKCELKKFWICKKSATPCTEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH