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Report for CCDS38574.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38574.1 Public Mus musculus 3 Trim33 23 108 98 CCDS HistoryNCBI Gene:94093Re-query CCDS DB by CCDS ID:38574.1Re-query CCDS DB by GeneID:94093See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38574.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106860.5 ENSMUSP00000102473.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106860.5Link to Ensembl Protein Viewer:ENSMUSP00000102473.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106860Re-query CCDS DB by Protein ID:ENSMUSP00000102473
Original member Current member NCBI NM_001079830.2 NP_001073299.1 Accepted alive Link to Nucleotide Sequence:NM_001079830.2Link to Protein Sequence:NP_001073299.1Re-query CCDS DB by Nucleotide ID:NM_001079830Re-query CCDS DB by Protein ID:NP_001073299Link to BLAST:NP_001073299.1

Chromosomal Locations for CCDS 38574.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 103279879 103280446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103310309 103310427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103310824 103310968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103311381 103311513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103321545 103321661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103324645 103324759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103326088 103326234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103326792 103326909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103329038 103329312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103330080 103330244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103331610 103331807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103337399 103337531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103339280 103339343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103341560 103341719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103344294 103344643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103346645 103346768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103348321 103348395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103352003 103352155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103353697 103353909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3372 nt):
ATGGCGGAAAACAAAGGCGGCGGTGAGGCAGAGAGTGGCGGCGGGGGCAGCGGTAGCGCGCCGGTAACCG
CCGGGGCCGCCGGGCCCACGGCGCAGGAGGCGGAGCCGCCTCTCGCCGCGGTGCTGGTGGAGGAGGAGGA
GGAGGAAGGCGGCAGGGCTGGCGCGGAGGGCGGTGCGGCTGGGCCCGACGACGGGGGGGTGGCCGCGGCC
TCCTCAAGCTCGGCCCCGGCCGCCTCGGTCCCCGCGGCCTCAGTGGGCTCCGCGGTCCCCGGAGGCGCGG
CATCGACGCCGGCTCCAGCTGCTGCCCCAGCCCCGGCCCCGGCCCCGGCCCCGGCCCCGGCCCCCGCTCC
CGCCCCGGCTCCTGGTTCCTCGTCGGGGCCACCTCTCGGACCACCAGCCTCGCTTCTGGACACCTGCGCG
GTGTGTCAGCAGAGCTTGCAGAGCCGGCGCGAGGCGGAGCCCAAGCTGCTCCCCTGCCTGCACTCCTTCT
GCCTGCGCTGTCTGCCGGAGCCGGAGCGCCAGCTCAGCGTGCCCATCCCTGGGGGCAGCAACGGTGACGT
CCAGCAAGTTGGTGTAATACGGTGTCCAGTATGTCGTCAAGAATGTAGACAGATAGATCTTGTGGATAAT
TATTTTGTGAAAGACACATCTGAAGCTCCTAGCAGCTCTGATGAGAAATCAGAACAGGTATGTACTAGTT
GTGAAGATAATGCAAGTGCAGTTGGTTTTTGTGTAGAATGTGGAGAGTGGCTGTGTAAGACATGCATTGA
AGCACATCAAAGAGTAAAATTCACTAAAGACCACCTGATCAGGAAAAAAGAAGATGTCTCAGAGTCTGTT
GGAACATCTGGTCAGCGCCCAGTGTTTTGTCCTGTACATAAACAAGAGCAGTTGAAACTATTCTGTGAAA
CGTGTGATAGATTGACGTGTAGAGACTGTCAACTTTTGGAGCACAAAGAACATAGGTATCAGTTTTTAGA
AGAGGCTTTTCAAAATCAGAAAGGTGCAATTGAAAATCTGTTGGCTAAGCTTCTTGAAAAGAAGAATTAT
GTTCATTTTGCAGCTACACAAGTGCAGAATAGGATTAAAGAAGTAAATGAGACTAACAAACGTGTAGAAC
AGGAAATTAAAGTGGCCATCTTCACCCTTATCAATGAAATTAATAAGAAAGGAAAATCTCTCTTGCAACA
GCTAGAGAATGTTACAAAAGAAAGACAGATGAAGTTACTACAGCAGCAGAATGATATCACAGGCCTCTCC
CGGCAGGTGAAGCATGTTATGAACTTTACAAACTGGGCCATTGCAAGTGGCAGCAGCACGGCCCTACTTT
ATAGCAAGCGTCTGATTACTTTTCAGTTACGTCATATTTTGAAAGCCCGATGTGATCCTGTTCCTGCTGC
CAATGGAGCAATTCGTTTCCATTGTGATCCCACCTTCTGGGCCAAAAATGTAGTGAATTTAGGTAATCTA
GTAATAGAGAGTAAGCCAGCTCCTGGTTATACTCCTAATGTTGTAGTTGGGCAAGTTCCTCCAGGGACAA
ACCACATTAGTAAAACCCCTGGACAGATTAATTTAGCACAGCTTCGACTCCAGCACATGCAGCAACAAGT
GTATGCACAGAAACATCAGCAGTTACAACAGATGAGACTGCAGCAACCACCAGCTCCTATACCAACAACA
ACAGCAACAACCCAGCAGCATCCTAGGCAAGCAGCCCCACAGATGTTACAACAACAGCCTCCAAGATTGA
TCAGTGTGCAAACAATGCAAAGAGGCAACATGAACTGTGGAGCATTTCAAGCCCATCAAATGAGACTGGC
TCAGAATGCTGCCAGAATACCAGGGATCCCCAGGCACAGTGCCCCTCAGTATTCCATGATGCAGCCACAT
CTCCAAAGACAACATTCAAATCCAGGACATGCTGGACCGTTTCCTGTTGTATCAGCACACAACCCAATCA
ACCCAACAAGTCCCACCACAGCAACTATGGCAAATGCAAATCGAGGTCCCACCAGCCCGTCTGTTACAGC
AATAGAATTAATACCCTCAGTCACCAATCCAGAAAACCTTCCATCGTTGCCAGATATCCCACCTATACAG
TTGGAAGATGCTGGCTCAAGTAGTTTAGATAATCTACTGAGTAGATATATCTCAGGCAGTCATCTACCCC
CTCAGCCTACAAGTACCATGAATCCTTCCCCAGGACCCTCTGCGTTATCACCTGGATCTTCAGGCTTATC
CAATTCTCACACACCTGTGAGACCCCCTAGCACGTCTAGTACTGGCAGTCGAGGCAGCTGCGGATCATCA
GGAAGAACTGCTGAGAAAAGTGCTCATAGTTTCAAGTCTGATCAGGTGAAGGTCAAGCAGGAACCTGGGA
CTGAAGAAGAGATATGCAGCTTTTCAGGAGCTGTGAAACAAGAGAAGACAGAGGATGGCAGGAGGAGTGC
CTGTATGTTGAGCAGTCCTGAGAGTAGTTTGACACCACCTCTTTCAACTAACCTTCACCTAGAGAGTGAG
CTGGATACATTAACAGGCCTGGAGAACCACGTGAAGACTGAACCTACAGATATCAGTGAAAGCTGCAAAC
AGTCAGGACTCAGTAACCTAGTCAATGGAAAGTCTCCAATTCGAAACCTCATGCACAGGTCGGCAAGGAT
TGGAGGGGATGGCAATAGCAAAGATGATGACCCAAATGAAGACTGGTGTGCCGTCTGCCAGAACGGAGGG
GATCTTTTGTGTTGTGAGAAATGTCCGAAGGTCTTTCATCTTACCTGTCATGTTCCAACACTTCTCAGCT
TTCCAAGTGGAGACTGGATATGCACATTTTGCAGAGATATTGGGAAGCCAGAAGTTGAATATGATTGTGA
TAATATGCAGCATAGTAAGAAGGGGAAAACTGCACAAGGCTTAAGCCCTGTGGACCAAAGGAAATGTGAA
CGTCTTCTGCTTTACCTCTATTGTCACGAATTAAGTATTGAATTCCAGGAGCCTGTTCCTGTTTCGATAC
CAAACTACTATAAAATTATAAAGAAACCGATGGATTTATCAACGGTGAAGAAGAAGCTTCAGAAAAAACA
TTCCCAGCATTACCAAATCCCAGATGACTTTGTGGCTGATGTCCGTTTGATCTTCAAGAACTGTGAAAGG
TTTAATGAAGGTGATTCAGAAGTAGCTAAGGCAGGGAAAGCAGTTGCATTGTACTTTGAAGATAAACTCT
CAGAGATCTACTCAGACAGGACCTTCACTCCTTTGCCAGAGTTTGAGCAGGACGAAGATGATGGTGAAGT
AACAGAAGACTCTGACGAAGATTTTATACAGCCTCGTAGAAAACGCCTAAAGTCAGACGAGAGACCAGTA
CATATAAAGTAA

Translation (1123 aa):
MAENKGGGEAESGGGGSGSAPVTAGAAGPTAQEAEPPLAAVLVEEEEEEGGRAGAEGGAAGPDDGGVAAA
SSSSAPAASVPAASVGSAVPGGAASTPAPAAAPAPAPAPAPAPAPAPAPAPGSSSGPPLGPPASLLDTCA
VCQQSLQSRREAEPKLLPCLHSFCLRCLPEPERQLSVPIPGGSNGDVQQVGVIRCPVCRQECRQIDLVDN
YFVKDTSEAPSSSDEKSEQVCTSCEDNASAVGFCVECGEWLCKTCIEAHQRVKFTKDHLIRKKEDVSESV
GTSGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHRYQFLEEAFQNQKGAIENLLAKLLEKKNY
VHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLINEINKKGKSLLQQLENVTKERQMKLLQQQNDITGLS
RQVKHVMNFTNWAIASGSSTALLYSKRLITFQLRHILKARCDPVPAANGAIRFHCDPTFWAKNVVNLGNL
VIESKPAPGYTPNVVVGQVPPGTNHISKTPGQINLAQLRLQHMQQQVYAQKHQQLQQMRLQQPPAPIPTT
TATTQQHPRQAAPQMLQQQPPRLISVQTMQRGNMNCGAFQAHQMRLAQNAARIPGIPRHSAPQYSMMQPH
LQRQHSNPGHAGPFPVVSAHNPINPTSPTTATMANANRGPTSPSVTAIELIPSVTNPENLPSLPDIPPIQ
LEDAGSSSLDNLLSRYISGSHLPPQPTSTMNPSPGPSALSPGSSGLSNSHTPVRPPSTSSTGSRGSCGSS
GRTAEKSAHSFKSDQVKVKQEPGTEEEICSFSGAVKQEKTEDGRRSACMLSSPESSLTPPLSTNLHLESE
LDTLTGLENHVKTEPTDISESCKQSGLSNLVNGKSPIRNLMHRSARIGGDGNSKDDDPNEDWCAVCQNGG
DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYDCDNMQHSKKGKTAQGLSPVDQRKCE
RLLLYLYCHELSIEFQEPVPVSIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCER
FNEGDSEVAKAGKAVALYFEDKLSEIYSDRTFTPLPEFEQDEDDGEVTEDSDEDFIQPRRKRLKSDERPV
HIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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