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Report for CCDS56636.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56636.1 Public Mus musculus 1 Gigyf2 23 108 98 CCDS HistoryNCBI Gene:227331Re-query CCDS DB by CCDS ID:56636.1Re-query CCDS DB by GeneID:227331See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56636.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172794.7 ENSMUSP00000134077.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172794.7Link to Ensembl Protein Viewer:ENSMUSP00000134077.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172794Re-query CCDS DB by Protein ID:ENSMUSP00000134077
Original member Current member NCBI NM_001110212.2 NP_001103682.1 Accepted alive Link to Nucleotide Sequence:NM_001110212.2Link to Protein Sequence:NP_001103682.1Re-query CCDS DB by Nucleotide ID:NM_001110212Re-query CCDS DB by Protein ID:NP_001103682Link to BLAST:NP_001103682.1

Chromosomal Locations for CCDS 56636.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 87354446 87354486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87364104 87364233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87365184 87365279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87373997 87374111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87378972 87379083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87379968 87380008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87403667 87403846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87407002 87407201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87407293 87407455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87407535 87407723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87410662 87410858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87411708 87411867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87416818 87416984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87419088 87419179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87420285 87420392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87421491 87421591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87423181 87423281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87425065 87425226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87428570 87428728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87433680 87433916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87436769 87436891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87440388 87440612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87440717 87440922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87442011 87442165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87443645 87443826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87446312 87446459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87449078 87449145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3858 nt):
ATGGCAGCAGAAACACAGACACTAAACTTTGGGCCTGAATGGCTCCGTGCTCTGTCCAGTGGTGGGAGTA
TCACGTCCCCTCCTCTTTCTCCGGCCCTGCCAAAGTATAAATTAGCAGATTATCGATATGGCCGAGAAGA
AATGTTAGCACTTTTCCTTAAAGACTACAAGATACCCTTTGATCTTCTGGAGAAAGAATTCCTGCCTATC
CTACAGGAGGAGCCCTTGCCACCATTGGCTCTAGTACCCTTTACAGAAGAAGAGCAGAGAAACTTTTCCA
TGTCTGTAAATAGTGCCGCTGTCCTGCGATTGACAGGACGAGGAGGAGGAGGAGGAACAGTGGTGGGGGC
TCCTAGAGGTCGAAGTTCTTCAAGAGGGCGAGGCAGAGGTAGAGGTGAATGTGGTTTCTACCAAAGAAGT
TTTGATGAAGTAGAGGGTGTGTTTGGGCGAGGAGGTGGCAGGGAAATGCATAGATCACAGAGCTGGGAAG
AAAGGGGTGACAGGCGCTTTGAAAAACCAGGAAGAAAAGATGTAGGGAGACCAAATTTTGAGGAAAGTGG
ACCAACGTCTGTGGGGAGAAAGCATGAATTTATACGGTCAGAAAGTGAAAACTGGCGAATCTTTAGAGAG
GAACAGAATGGAGAAGATGAAGATGGAGGTTGGCGGTTAGCTGGATCAAGAAGGGATGGAGAGAGATGGC
GGCCTCACAGTCCTGGCTGGCGGGAACACATGGAACGCCGTCGGAGGTTTGAGTTTGATTTTCGAGACCG
AGATGATGAGCGTGGTTACCGAAGGGTGCGCTCTGGCAGTGGGAGCATAGATGACGACAGGGATAGCTTG
CCGGAGTGGTGCTTAGAGGATGCTGAGGAAGAAATGGGCACGTTTGACTCTTCTGGGGCATTCCTCTCTC
TAAAAAAAGTGCAGAAAGAACCTATTCCTGAAGAGCAGGAAATGGACTTTAGGCCTGTGGAGGAGGGAGA
GGAGCGCTCTGACTCTGACAGCAGCCATAACGAAGAGGCCAAAGAACCGGATAAGACAAACCGAAGAGAG
GGGGAGAAAACAGACAGAGCAGGGGCTGAAGCTAGTGAGGAAGTACCTCAGACGTCATTGTCATCTGCTA
GACCAGGTACCCCTTCAGATCATCAGCCTCAAGAAGCCACACAGTTTGAGAGGAAAGATGAACCCAAAGC
TGAACAAGTGGAAAAGGCTGAAGAAGAGAATCGGTCAGAAAATAGTCTCTCAGCCAAGGTCCCCAGCAGA
GGGGATGAAACGGTGCCTGCCTCCCAGCAACCCTCCACACCGCTTCCTCCAGACACAGCCTCTCCTCTCC
TCATCCTGTCGCCTCCTGTTCCTACTCCTAGTTCTGCCTCTCGGCCAGTTGAGACAGCAGCCGTCGAAGC
TCCTGGTATGAGCAGTGTTTCCACAGAGCCAGATGATGAAGAGGGCCTCAAACACTTGGAACAGCAAGCT
GAGAAGATGGTGGCTTATCTCCAAGACAGTGCACTAGACGACGAAAGATTGACATCAAAACTGCAAGAGC
ACCGAGCTAAAGGAGTGTCAATCCCACTGATGCATGAAGCAATGCAGAAGTGGTATTACAAAGACCCTCA
GGGGGAGATTCAAGGTCCCTTTAACAATCAGGAGATGGCCGAGTGGTTTCAGGCGGGCTATTTTACTATG
TCTTTGCTGGTGAAGAGAGCATGTGATGAAAGCTTCCAGCCCCTTGGTGATATCATGAAAATGTGGGGAA
GGGTTCCTTTCTCTCCAGGCCCAGCTCCCCCTCCTCATATGGGAGAATTGGACCAGGAACGCCTGACCAG
ACAGCAGGAACTCACTGCCTTATACCAGATGCAGCACCTCCAGTACCAGCAGTTCTTAATCCAACAACAG
TATGCACAGGTTTTGGCTCAACAGCAGAAAGCAGCTTTGTCATCTCAGCAGCAACAACAATTGGCTCTTC
TTCTGCAGCAGTTCCAGGCTCTGAAGATGAGAATGTCTGATCAGAACATCATTCCCTCAGTAACTAGGTC
TGTGTCAGTGCCAGATACTGGCTCTATCTGGGAGCTTCAGCCAGCAGCCTCACAGCCTGCAGTTTGGGAA
GGTGGTAGTGTATGGGATCTTCCCCTGGACACCACAGCACCAGGTCCTTCCCTGGAACAGCTTCAGCAGC
TAGAGAAGGCCAAAGCTGCAAAGTTAGAACAGGAGAGAAGAGAGGCAGAAATGAGGGCAAAAAGGGAAGA
GGAGGAGCGAAAGAGGCAAGAAGAACTCCGAAGACAACAGGAGGAAATCCTTCGGAGGCAGCAGGAGGAA
GAAAGGAAAAGACGGGAAGAAGAGGAACTTGCTCGAAGGAAGCAGGAGGAGGCTCTGCGGCGCCAACGGG
AGCAAGAGATTGCGCTAAGGCGGCAGCGAGAAGAGGAGGAAAGACAGCAGCAGGAAGAAGCTCTTAGACG
ATTGGAGGAGCGGAGGAGAGAAGAGGAGGAAAGGCGGAAGCAGGAAGAACTGCTGCGCAAGCAGGAAGAG
GAGGCTGCCAAATGGGCCCGGGAAGAGGAAGAAGCCCAGCGCCGACTGGAAGAGAACCGGCTGCGCATGG
AGGAGGAGGCTGCCAGACTTCGGCATGAAGAAGAAGAAAGAAAACGGAAGGAATTGGAGCTGCAGAGGCA
GAAGGATCTGATGCGTCAGAGACAGCAGCAGCAAGAGGCTCTCCGAAGGCTGCAGCAGCAACAGCAGCAG
CAACAGCTTGCACAAATGAAGCTTCCCTCTTCGTCAACGTGGGGTCAGCAGTCTAACACAGCAACATGTC
AGTCCCAGGCCACGCTGTCATTGGCTGAGATCCAGAAGCTGGAAGAAGAACGAGAACGCCAGCTTCGTGA
AGAGCAAAGACGTCAGCAGAGGGAATTGATGAAAGCTCTCCAGCAGCAGCAGCAGCAGCAGCAACAACAA
AAACTCTCAGGTTGGGGGAATGTCAGCAAACCTGCAGGTACCACCAAGTCTCTACTAGAGATCCAGCAGG
AAGAGGCCAGGCAGATGCAGAAGCAGCAGCAGCAGCAACAACAACAACAACAGCAACACCAGCAATCAAA
CAGAGCCCGGAACAGCACACATTCCAACCTGCATACCAGCCTTGGGAATTCTGTATGGGGCTCTATAAAC
ACAGGTCCTTCTAACCAGTGGGCGTCTGAGCTAGTCAGTAGTATCTGGAGTAATGCAGACACCAAAAACT
CCAACATGGGGTTTTGGGATGATGCAGTGAAAGAGGTGGGACCTAGAAATTCAACAAATAAAAATAAAAA
CAACGCCAGTCTCAGTAAATCTGTAGGTGTGTCTAACCGGCAGAATAAGAAAGTAGAAGAAGAAGAAAAG
TTGCTGAAGCTCTTTCAGGGAGTAAATAAAGCCCAAGATGGATTTACCCAGTGGTGTGAACAGATGCTTC
ATGCCCTTAATACGGCAAATAACTTGGATGTTCCCACGTTTGTTTCTTTCTTGAAAGAAGTGGAGTCTCC
TTATGAAGTCCATGACTATACCAGGGCCTATTTAGGAGATACTTCCGAGGCCAAGGAGTTTGCCAAGCAG
TTCCTTGAACGCCGTGCCAAACAGAAAGTCAACCAGCAGCGTCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGGACTCTGTCTGGGGGATGAACCATAGTACACTCCATTCGGTATTTCAGACCAATCAAAGCAACAACCA
ACAATCAAATTTTGAGGCTGTGCAAAGTGGCAAGAAGAAGAAAAAGCAGAAGATGGTTCGAGCAGATCCC
AGTTTATTAGGGTTTTCAGTCAACGCCTCGTCAGAGCGACTGAACATGGGTGAGATTGAGACTCTGGATG
ACTACTGA

Translation (1285 aa):
MAAETQTLNFGPEWLRALSSGGSITSPPLSPALPKYKLADYRYGREEMLALFLKDYKIPFDLLEKEFLPI
LQEEPLPPLALVPFTEEEQRNFSMSVNSAAVLRLTGRGGGGGTVVGAPRGRSSSRGRGRGRGECGFYQRS
FDEVEGVFGRGGGREMHRSQSWEERGDRRFEKPGRKDVGRPNFEESGPTSVGRKHEFIRSESENWRIFRE
EQNGEDEDGGWRLAGSRRDGERWRPHSPGWREHMERRRRFEFDFRDRDDERGYRRVRSGSGSIDDDRDSL
PEWCLEDAEEEMGTFDSSGAFLSLKKVQKEPIPEEQEMDFRPVEEGEERSDSDSSHNEEAKEPDKTNRRE
GEKTDRAGAEASEEVPQTSLSSARPGTPSDHQPQEATQFERKDEPKAEQVEKAEEENRSENSLSAKVPSR
GDETVPASQQPSTPLPPDTASPLLILSPPVPTPSSASRPVETAAVEAPGMSSVSTEPDDEEGLKHLEQQA
EKMVAYLQDSALDDERLTSKLQEHRAKGVSIPLMHEAMQKWYYKDPQGEIQGPFNNQEMAEWFQAGYFTM
SLLVKRACDESFQPLGDIMKMWGRVPFSPGPAPPPHMGELDQERLTRQQELTALYQMQHLQYQQFLIQQQ
YAQVLAQQQKAALSSQQQQQLALLLQQFQALKMRMSDQNIIPSVTRSVSVPDTGSIWELQPAASQPAVWE
GGSVWDLPLDTTAPGPSLEQLQQLEKAKAAKLEQERREAEMRAKREEEERKRQEELRRQQEEILRRQQEE
ERKRREEEELARRKQEEALRRQREQEIALRRQREEEERQQQEEALRRLEERRREEEERRKQEELLRKQEE
EAAKWAREEEEAQRRLEENRLRMEEEAARLRHEEEERKRKELELQRQKDLMRQRQQQQEALRRLQQQQQQ
QQLAQMKLPSSSTWGQQSNTATCQSQATLSLAEIQKLEEERERQLREEQRRQQRELMKALQQQQQQQQQQ
KLSGWGNVSKPAGTTKSLLEIQQEEARQMQKQQQQQQQQQQQHQQSNRARNSTHSNLHTSLGNSVWGSIN
TGPSNQWASELVSSIWSNADTKNSNMGFWDDAVKEVGPRNSTNKNKNNASLSKSVGVSNRQNKKVEEEEK
LLKLFQGVNKAQDGFTQWCEQMLHALNTANNLDVPTFVSFLKEVESPYEVHDYTRAYLGDTSEAKEFAKQ
FLERRAKQKVNQQRQQQQQQQQQQDSVWGMNHSTLHSVFQTNQSNNQQSNFEAVQSGKKKKKQKMVRADP
SLLGFSVNASSERLNMGEIETLDDY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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