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Report for CCDS71460.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71460.1 Public Mus musculus 4 P3h1 23 108 98 CCDS HistoryNCBI Gene:56401Re-query CCDS DB by CCDS ID:71460.1Re-query CCDS DB by GeneID:56401See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71460.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030393.12 ENSMUSP00000030393.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030393.12Link to Ensembl Protein Viewer:ENSMUSP00000030393.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000030393Re-query CCDS DB by Protein ID:ENSMUSP00000030393
Original member Current member NCBI NM_001286148.1 NP_001273077.1 Accepted alive Link to Nucleotide Sequence:NM_001286148.1Link to Protein Sequence:NP_001273077.1Re-query CCDS DB by Nucleotide ID:NM_001286148Re-query CCDS DB by Protein ID:NP_001273077Link to BLAST:NP_001273077.1

Chromosomal Locations for CCDS 71460.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 119232957 119233430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119235246 119235398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119236777 119236966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119237865 119237996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119238646 119238785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119241117 119241206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119241482 119241534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119241662 119241804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119244022 119244149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119244385 119244480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119244957 119245107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119246635 119246752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119247131 119247206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119247445 119247585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119247891 119248046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2241 nt):
ATGGCGGTGAGCGAAAGGAGGCTGCTGGCAGCGATGCTAGCGGTCGCCGCCGCCGCCGCCTTACGGGTTG
CGGCGGAGTCTGAGCCGGGATGGGACGTGGCAGCCCCTGACCTGCTTTACGCAGAGGGGACCGCGGCCTA
CTCGCGCGGGGACTGGCCCGGGGTGGTCCTGAACATGGAGCGGGCGCTGCGCTCGCGGGCGGCCCTGCGT
GCCCTCCGCCTGCGCTGCCGCACACGCTGTGCCACCGAACTGCCGTGGGCACCGGACCTGGATCTCGGTC
CGGACCCCAGCCTGAGCCAGGACCCGGGCGCCGCCGCCCTGCACGACCTGCGCTTCTTCGGAGCCGTGCT
GCGCCGTGCCGCCTGCCTACGCCGCTGCCTCGGGCCGCCCTCTGCCCACTTGCTGAGTGAAGAACTGGAC
CTGGAGTTCAACAAGCGGAGCCCGTACAACTACCTGCAGGTCGCCTATTTCAAGATAAACAAGCTGGAGA
AAGCTGTGGCTGCGGCACACACCTTCTTTGTGGGCAATCCTGAGCACATGGAGATGCGGCAGAACCTCGA
CTATTACCAAACCATGTCTGGGGTGAAGGAGGCAGACTTCAGGGATCTCGAGGCCAAGCCCCATATGCAT
GAGTTTCGGCTGGGGGTACGACTCTACTCAGAGGAGAAGCCACAGGAAGCTGTGCCCCACCTGGAGGCGG
CACTGCAAGAGTACTTTGTGGCCGATGAGGAATGCCGTGCCCTCTGCGAAGGGCCCTATGACTACGACGG
CTACAACTACCTAGACTACAGCGCTGACCTCTTCCAGGCCATCACAGATCATTACGTCCAGGTCCTCAAC
TGTAAGCAGAACTGTGTCACGGAGCTGGCTTCCCACCCAAGTAGGGAAAAGCCCTTTGAAGACTTCCTCC
CTTCACACTATAATTACCTACAGTTTGCCTACTACAACATTGGGAACTATACACAAGCTATTGAATGTGC
CAAGACCTACCTCCTCTTCTTTCCCAATGATGAGGTGATGCACCAGAATCTGGCTTATTACACAGCCATG
CTTGGAGAAGAAGAGGCCAGCTCCATCAGCCCCAGGGAGAATGCCGAGGAATACCGACGTCGAAGCCTGT
TGGAGAAAGAACTGCTTTTCTTCGCTTATGACATTTTTGGAATTCCCTTTGTGGATCCGGACTCATGGAC
TCCAGAAGAGGTGATTCCCAAGAGACTGCAGGAGAAACAGAATCAGTGCTGTCATGCTCACAGGTCGGAA
CGCGAAACCGCAGTCCGCATCTCCCAGGAGATTGGCAACCTTATGAAGGAGATCGAGACCCTCGTGGAGG
AGAAGACCAAGGAGTCCTTGGATGTGAGCCGACTGACGCGGGAAGGTGGTCCCCTGCTGTATGAAGGCAT
CAGTCTCACCATGAATTCCAAAGTCTTGAATGGCTCCCAGCGGGTGGTGATGGATGGTGTGATCTCTGAT
GATGAGTGCCAGGAGCTGCAGAGACTGACCAATGCGGCAGCAACTTCGGGAGATGGCTACCGAGGTCAGA
CCTCCCCACACACCCCAAATGAAAAGTTCTATGGTGTTACTGTCCTCAAAGCTCTCAAGCTCGGGCAGGA
AGGAAAAGTTCCTCTGCAGAGTGCCCGCATGTACTACAACGTGACAGAGAAGGTGCGGCGCGTCATGGAG
TCCTACTTCCGCCTGGACACGCCCCTCTATTTCTCTTATTCCCACCTCGTGTGCCGCACTGCAATAGAAG
AGTCACAGGCTGAGAGGAAGGACAGTAGCCACCCCGTCCACGTGGATAACTGCATCCTGAATGCCGAAGC
CCTCATGTGTATCAAGGAGCCCCCAGCCTACACGTTCCGGGACTACAGCGCCATCCTTTACCTCAATGGC
GACTTCGATGGAGGAAACTTTTACTTCACAGAACTAGATGCCAAGACTGTGACGGCAGAGGTGCAGCCCC
AGTGTGGAAGGGCTGTGGGATTCTCTTCTGGCACTGAGAACCCACATGGAGTGAAGGCTGTCACCAGGGG
GCAGCGCTGCGCCATCGCCCTGTGGTTCACGCTGGATCCTCGGCACAGTGAGAGAGACAGGGTGCAGGCA
GATGACCTGGTGAAGATGCTGTTCAGCCCAGAAGAGGTGGACCTCCCCCAGGAACAGCCCCTGCCTGACC
AGCAGGGCTCGCCAGAGCCTGGAGAAGAGTCTCTGTCAGACAGAGGGTCGCTGCACAAGGATGAGCTATG
A

Translation (746 aa):
MAVSERRLLAAMLAVAAAAALRVAAESEPGWDVAAPDLLYAEGTAAYSRGDWPGVVLNMERALRSRAALR
ALRLRCRTRCATELPWAPDLDLGPDPSLSQDPGAAALHDLRFFGAVLRRAACLRRCLGPPSAHLLSEELD
LEFNKRSPYNYLQVAYFKINKLEKAVAAAHTFFVGNPEHMEMRQNLDYYQTMSGVKEADFRDLEAKPHMH
EFRLGVRLYSEEKPQEAVPHLEAALQEYFVADEECRALCEGPYDYDGYNYLDYSADLFQAITDHYVQVLN
CKQNCVTELASHPSREKPFEDFLPSHYNYLQFAYYNIGNYTQAIECAKTYLLFFPNDEVMHQNLAYYTAM
LGEEEASSISPRENAEEYRRRSLLEKELLFFAYDIFGIPFVDPDSWTPEEVIPKRLQEKQNQCCHAHRSE
RETAVRISQEIGNLMKEIETLVEEKTKESLDVSRLTREGGPLLYEGISLTMNSKVLNGSQRVVMDGVISD
DECQELQRLTNAAATSGDGYRGQTSPHTPNEKFYGVTVLKALKLGQEGKVPLQSARMYYNVTEKVRRVME
SYFRLDTPLYFSYSHLVCRTAIEESQAERKDSSHPVHVDNCILNAEALMCIKEPPAYTFRDYSAILYLNG
DFDGGNFYFTELDAKTVTAEVQPQCGRAVGFSSGTENPHGVKAVTRGQRCAIALWFTLDPRHSERDRVQA
DDLVKMLFSPEEVDLPQEQPLPDQQGSPEPGEESLSDRGSLHKDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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