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Report for CCDS70078.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70078.1 Public Mus musculus 10 Matk 23 108 98 CCDS HistoryNCBI Gene:17179Re-query CCDS DB by CCDS ID:70078.1Re-query CCDS DB by GeneID:17179See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70078.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105328.9 ENSMUSP00000100965.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105328.9Link to Ensembl Protein Viewer:ENSMUSP00000100965.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000105328Re-query CCDS DB by Protein ID:ENSMUSP00000100965
Original member Current member EBI ENSMUST00000119547.7 ENSMUSP00000113576.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119547.7Link to Ensembl Protein Viewer:ENSMUSP00000113576.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119547Re-query CCDS DB by Protein ID:ENSMUSP00000113576
Original member NCBI NM_001285854.1 NP_001272783.1 Updated not alive Link to Nucleotide Sequence:NM_001285854.1Link to Protein Sequence:NP_001272783.1Re-query CCDS DB by Nucleotide ID:NM_001285854Re-query CCDS DB by Protein ID:NP_001272783
Current member NCBI NM_001285854.2 NP_001272783.1 Accepted alive Link to Nucleotide Sequence:NM_001285854.2Link to Protein Sequence:NP_001272783.1Re-query CCDS DB by Nucleotide ID:NM_001285854Re-query CCDS DB by Protein ID:NP_001272783Link to BLAST:NP_001272783.1
Original member NCBI NM_001285855.1 NP_001272784.1 Updated not alive Link to Nucleotide Sequence:NM_001285855.1Link to Protein Sequence:NP_001272784.1Re-query CCDS DB by Nucleotide ID:NM_001285855Re-query CCDS DB by Protein ID:NP_001272784
Current member NCBI NM_001285855.2 NP_001272784.1 Accepted alive Link to Nucleotide Sequence:NM_001285855.2Link to Protein Sequence:NP_001272784.1Re-query CCDS DB by Nucleotide ID:NM_001285855Re-query CCDS DB by Protein ID:NP_001272784Link to BLAST:NP_001272784.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272783.1 465 P41242-3 465 99.5699% 0 2
NP_001272784.1 465 P41242-3 465 99.5699% 0 2

Chromosomal Locations for CCDS 70078.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 81258531 81258539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81259177 81259287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81259383 81259498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81259587 81259806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81260089 81260182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81260908 81260973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81261443 81261542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81261631 81261715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81261795 81261868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81261961 81262156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81262448 81262534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81262623 81262862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGCCAACGCGCTGGGCCCCTGGGACTCAATGCATGACCAAGTGTGAGAACTCTCGCCCCAAGCCCGGTG
AGCTAGCCTTTCGAAAGGGTGACATGGTGACCATCTTGGAGGCCTGTGAGGACAAGAGCTGGTACCGAGC
CAAGCACCATGGCAGTGGGCAGGAAGGGCTGCTGGCGGCCGCTGCTCTGCGACAGCGGGAGGCCCTCTCC
ACAGACCCCAAGCTCAGCCTCATGCCATGGTTTCATGGCAAGATCTCCGGCCAGGAAGCCATACAGCAGC
TGCAGCCACCCGAGGACGGGCTGTTCCTTGTGAGGGAATCAGCTCGTCACCCTGGAGACTATGTCTTGTG
TGTCAGTTTCGGCCGTGACGTCATCCACTACCGTGTTTTGCATCGAGATGGGCACCTCACCATCGATGAG
GCCGTGTGTTTCTGTAACCTGATGGACATGGTGGAGCACTACACCAAGGACAAGGGGGCCATCTGCACCA
AGCTGGTGAAGCCAAGGAGGAAACAGGGCGCAAAGTCTGCAGAGGAGGAGCTCGCCAAGGCTGGCTGGCT
ACTCGACCTGCAGCATCTGACTCTGGGAGCACAGATTGGAGAGGGGGAGTTTGGAGCCGTCCTACAGGGT
GAGTACCTGGGACAGAAGGTGGCTGTGAAGAATATCAAGTGTGATGTGACAGCCCAGGCCTTCCTGGATG
AGACGGCTGTGATGACGAAGCTGCAGCACAGGAACCTAGTGCGACTCCTGGGTGTGATCCTGCACCACGG
CTTGTACATTGTCATGGAGCACGTGAGCAAGGGCAACCTGGTGAACTTCCTGCGCACGCGGGGCCGTGCT
CTTGTGAGCACCTCTCAGCTTCTGCAGTTTGCTCTTCATGTTGCTGAAGGCATGGAATACCTGGAGAGCA
AGAAGCTGGTGCACCGGGACCTGGCTGCTCGGAACATCCTGGTCTCTGAGGACTTGGTGGCCAAGGTCAG
TGACTTTGGCTTAGCCAAGGCAGAGCGCAAGGGGCTGGACTCAAGCCGGCTGCCAGTCAAGTGGACGGCA
CCTGAGGCTCTCAAAAACGGGCGGTTCTCCAGCAAGTCGGATGTCTGGAGTTTTGGGGTGCTGTTGTGGG
AAGTCTTCTCTTATGGAAGAGCCCCATACCCCAAGATGTCGCTAAAGGAGGTTTCAGAGGCTGTGGAGAA
GGGTTACCGCATGGAGCCCCCCGATGGCTGCCCAGGCTCTGTGCACACCCTCATGGGTAGCTGCTGGGAG
GCAGAGCCTGCGCGCCGACCACCCTTCCGCAAAATAGTGGAGAAGCTGGGCCGTGAGCTCCGCAGTGTGG
GTGTCTCGGCCCCCGCTGGGGGACAGGAGGCTGAGGGCTCAGCTCCCACACGGAGCCAGGACCCCTGA

Translation (465 aa):
MPTRWAPGTQCMTKCENSRPKPGELAFRKGDMVTILEACEDKSWYRAKHHGSGQEGLLAAAALRQREALS
TDPKLSLMPWFHGKISGQEAIQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTIDE
AVCFCNLMDMVEHYTKDKGAICTKLVKPRRKQGAKSAEEELAKAGWLLDLQHLTLGAQIGEGEFGAVLQG
EYLGQKVAVKNIKCDVTAQAFLDETAVMTKLQHRNLVRLLGVILHHGLYIVMEHVSKGNLVNFLRTRGRA
LVSTSQLLQFALHVAEGMEYLESKKLVHRDLAARNILVSEDLVAKVSDFGLAKAERKGLDSSRLPVKWTA
PEALKNGRFSSKSDVWSFGVLLWEVFSYGRAPYPKMSLKEVSEAVEKGYRMEPPDGCPGSVHTLMGSCWE
AEPARRPPFRKIVEKLGRELRSVGVSAPAGGQEAEGSAPTRSQDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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