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Report for CCDS70077.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70077.1 Public Mus musculus 10 Matk 23 108 98 CCDS HistoryNCBI Gene:17179Re-query CCDS DB by CCDS ID:70077.1Re-query CCDS DB by GeneID:17179See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70077.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121205.7 ENSMUSP00000113043.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121205.7Link to Ensembl Protein Viewer:ENSMUSP00000113043.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121205Re-query CCDS DB by Protein ID:ENSMUSP00000113043
Original member Current member EBI ENSMUST00000120265.1 ENSMUSP00000113666.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120265.1Link to Ensembl Protein Viewer:ENSMUSP00000113666.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120265Re-query CCDS DB by Protein ID:ENSMUSP00000113666
Original member NCBI NM_001285853.1 NP_001272782.1 Updated not alive Link to Nucleotide Sequence:NM_001285853.1Link to Protein Sequence:NP_001272782.1Re-query CCDS DB by Nucleotide ID:NM_001285853Re-query CCDS DB by Protein ID:NP_001272782
Current member NCBI NM_001285853.2 NP_001272782.1 Accepted alive Link to Nucleotide Sequence:NM_001285853.2Link to Protein Sequence:NP_001272782.1Re-query CCDS DB by Nucleotide ID:NM_001285853Re-query CCDS DB by Protein ID:NP_001272782Link to BLAST:NP_001272782.1

Chromosomal Locations for CCDS 70077.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 81258531 81258539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81259174 81259287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81259383 81259498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81259587 81259806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81260089 81260182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81260908 81260973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81261443 81261542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81261631 81261715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81261795 81261868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81261961 81262156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81262448 81262534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81262623 81262862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGCCAACGCAGCGCTGGGCCCCTGGGACTCAATGCATGACCAAGTGTGAGAACTCTCGCCCCAAGCCCG
GTGAGCTAGCCTTTCGAAAGGGTGACATGGTGACCATCTTGGAGGCCTGTGAGGACAAGAGCTGGTACCG
AGCCAAGCACCATGGCAGTGGGCAGGAAGGGCTGCTGGCGGCCGCTGCTCTGCGACAGCGGGAGGCCCTC
TCCACAGACCCCAAGCTCAGCCTCATGCCATGGTTTCATGGCAAGATCTCCGGCCAGGAAGCCATACAGC
AGCTGCAGCCACCCGAGGACGGGCTGTTCCTTGTGAGGGAATCAGCTCGTCACCCTGGAGACTATGTCTT
GTGTGTCAGTTTCGGCCGTGACGTCATCCACTACCGTGTTTTGCATCGAGATGGGCACCTCACCATCGAT
GAGGCCGTGTGTTTCTGTAACCTGATGGACATGGTGGAGCACTACACCAAGGACAAGGGGGCCATCTGCA
CCAAGCTGGTGAAGCCAAGGAGGAAACAGGGCGCAAAGTCTGCAGAGGAGGAGCTCGCCAAGGCTGGCTG
GCTACTCGACCTGCAGCATCTGACTCTGGGAGCACAGATTGGAGAGGGGGAGTTTGGAGCCGTCCTACAG
GGTGAGTACCTGGGACAGAAGGTGGCTGTGAAGAATATCAAGTGTGATGTGACAGCCCAGGCCTTCCTGG
ATGAGACGGCTGTGATGACGAAGCTGCAGCACAGGAACCTAGTGCGACTCCTGGGTGTGATCCTGCACCA
CGGCTTGTACATTGTCATGGAGCACGTGAGCAAGGGCAACCTGGTGAACTTCCTGCGCACGCGGGGCCGT
GCTCTTGTGAGCACCTCTCAGCTTCTGCAGTTTGCTCTTCATGTTGCTGAAGGCATGGAATACCTGGAGA
GCAAGAAGCTGGTGCACCGGGACCTGGCTGCTCGGAACATCCTGGTCTCTGAGGACTTGGTGGCCAAGGT
CAGTGACTTTGGCTTAGCCAAGGCAGAGCGCAAGGGGCTGGACTCAAGCCGGCTGCCAGTCAAGTGGACG
GCACCTGAGGCTCTCAAAAACGGGCGGTTCTCCAGCAAGTCGGATGTCTGGAGTTTTGGGGTGCTGTTGT
GGGAAGTCTTCTCTTATGGAAGAGCCCCATACCCCAAGATGTCGCTAAAGGAGGTTTCAGAGGCTGTGGA
GAAGGGTTACCGCATGGAGCCCCCCGATGGCTGCCCAGGCTCTGTGCACACCCTCATGGGTAGCTGCTGG
GAGGCAGAGCCTGCGCGCCGACCACCCTTCCGCAAAATAGTGGAGAAGCTGGGCCGTGAGCTCCGCAGTG
TGGGTGTCTCGGCCCCCGCTGGGGGACAGGAGGCTGAGGGCTCAGCTCCCACACGGAGCCAGGACCCCTG
A

Translation (466 aa):
MPTQRWAPGTQCMTKCENSRPKPGELAFRKGDMVTILEACEDKSWYRAKHHGSGQEGLLAAAALRQREAL
STDPKLSLMPWFHGKISGQEAIQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTID
EAVCFCNLMDMVEHYTKDKGAICTKLVKPRRKQGAKSAEEELAKAGWLLDLQHLTLGAQIGEGEFGAVLQ
GEYLGQKVAVKNIKCDVTAQAFLDETAVMTKLQHRNLVRLLGVILHHGLYIVMEHVSKGNLVNFLRTRGR
ALVSTSQLLQFALHVAEGMEYLESKKLVHRDLAARNILVSEDLVAKVSDFGLAKAERKGLDSSRLPVKWT
APEALKNGRFSSKSDVWSFGVLLWEVFSYGRAPYPKMSLKEVSEAVEKGYRMEPPDGCPGSVHTLMGSCW
EAEPARRPPFRKIVEKLGRELRSVGVSAPAGGQEAEGSAPTRSQDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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