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Report for CCDS19496.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19496.1 Public Mus musculus 5 Zfp326 23 108 98 CCDS HistoryNCBI Gene:54367Re-query CCDS DB by CCDS ID:19496.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19496.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031227.10 ENSMUSP00000031227.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031227.10Link to Ensembl Protein Viewer:ENSMUSP00000031227.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000031227Re-query CCDS DB by Protein ID:ENSMUSP00000031227
Original member Current member NCBI NM_018759.2 NP_061229.2 Accepted alive Link to Nucleotide Sequence:NM_018759.2Link to Protein Sequence:NP_061229.2Re-query CCDS DB by Nucleotide ID:NM_018759Re-query CCDS DB by Protein ID:NP_061229Link to BLAST:NP_061229.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061229.2 580 O88291-1 580 99.8276% 0 1

Chromosomal Locations for CCDS 19496.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 105876683 105876698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105878749 105878793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105886187 105886222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105886317 105886428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105888434 105888839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105891118 105891316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105896492 105896603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105905915 105906062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105907039 105907138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105910171 105910301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105911413 105911508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105914668 105915009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1743 nt):
ATGGACTTCGAGGACGATTACGTGCACTCTACTTGCAGGGGTGCTTACCAGGACTTTAACGGAATGGATC
GTGATTATGGCCCTGGATCTTACGGAGGGCTGGATCGTGACTATGGCCATGGATCCTATGGGGGTCAGAG
ATCCATGGATTCCTACCTAAACCAGTCCTATGGCATGGACAATCACAGTGGTGGTGGTGGGGGTAGCAGG
TTTGGACCTTATGAGTCTTACGACTCCAGGTCTTCTCTGGGTGGGCGAGATCTGTACAGATCTGGCTATG
GTTTTAATGAACCCGAACAAACCCGCTTCGGAGGTAGTTATGGTGGTCGATTTGAGAGCTCCTACCGGAA
TAGCCTTGACTCTTTCGGAGGTAGAAACCAGGGCGGGTCTAGCTGGGAAGCACCTTACTCCCGTTCAAAA
TTGAGGCCTGGGTTTATGGAGGACAGAGGAAGAGAGAATTACTCTTCCTACAGCAGTTTTTCTTCACCCC
ATATGAAGCCTGCACCTGTAGGCTCTCGGGGGAGAGGAACGCCTGCTTATCCTGAAAGTACGTTTGGAAG
CAGAAGCTATGATGCTTTTGGAGGACCATCCACAGGCAGAGGCCGAGGCCGAGGACATATGGGTGATTTT
GGAAGCTTCCATAGACCTGGAATTATTGTTGACTATCAAAACAAACCTGCCAATGTGACGATTGCTACTG
CAAGAGGAATAAAAAGAAAAATGATGCAAATATTTATTAAGCCCGGGGGAGCCTTTATCAAGAAGCCTAA
GCTAGCGAAACCTATGGATAAGATGAACCTCAGCAAATCACCTACAAAAACTGATCCTAAAAATGAAGAA
GAAGAAAAGCGGCGAATTGAGGCTCGGCGAGAGAAGCAAAGACGTAGACGAGAAAAAAACAGTGAAAAAT
ATGGAGATGGATACAGAATGGCATTCACATGTTCATTTTGTAAATTTCGAACCTTTGAAGAAAAAGATAT
TGAACTGCATCTGGAAAGTTCTTCTCACCAGGAAACATTAGATCATATTCAGAAACAAACCAAATTTGAT
AAAGTAGTTATGGAGTTTTTACATGAATGTATGGTGAATAAATTTAAAAAAGCATCTATTCGTAAGCAAC
AGACACTTAATCACCCAGAAGCTTACAAAATAATTGAAAAAGATATTATGGAAGGTGTTACTGCAGATGA
TCACATGATGAAAGTGGAGACTGTTCACTGTAGTGCTTGTAGCGTGTACATCCCTGCTTTACACAGCTCA
GTTCAGCTGCACCTAAAGTCTCCTGACCACAGCAAAGGGAAGCAGGCTTATAAGGAACAGATAAAGAGGG
AAAGTGTGCTGACTGCCACAAGCATCTTAAACAATCCGATCGTGAAGGCACGGTATGAGCGCTTTGTTAA
GGGAGAGAATCCTTTTGAAATTCAAGATCACCCTCAGGATCAGCAGATAGAAGGAGATGAAGAGGACGAA
GAGAAGATTGGTGAACCCATCGAGGAAGAGGAAGAGGAGGAGGAGGAAGAGGAGGAGGAAGGGGAGGAAG
CTGGATCTGTGGAGGAAGAAGGGGATGTGGAGGGAGAGGAGGGCACAGCAGAAGCCGCAGCAGCAGGGGA
AGCTGACGCAGTGGGAGAGGCAGAGGGAGCAGGGGAGGCAGAGGAGGCGGAGGAGGAGGAGGAAGAGGAG
GGAACCCAGGAGTTTGCTGCCCAGGCCTGTGCTACTGAGCAGTGCGAGCACAGGCAGATGTAG

Translation (580 aa):
MDFEDDYVHSTCRGAYQDFNGMDRDYGPGSYGGLDRDYGHGSYGGQRSMDSYLNQSYGMDNHSGGGGGSR
FGPYESYDSRSSLGGRDLYRSGYGFNEPEQTRFGGSYGGRFESSYRNSLDSFGGRNQGGSSWEAPYSRSK
LRPGFMEDRGRENYSSYSSFSSPHMKPAPVGSRGRGTPAYPESTFGSRSYDAFGGPSTGRGRGRGHMGDF
GSFHRPGIIVDYQNKPANVTIATARGIKRKMMQIFIKPGGAFIKKPKLAKPMDKMNLSKSPTKTDPKNEE
EEKRRIEARREKQRRRREKNSEKYGDGYRMAFTCSFCKFRTFEEKDIELHLESSSHQETLDHIQKQTKFD
KVVMEFLHECMVNKFKKASIRKQQTLNHPEAYKIIEKDIMEGVTADDHMMKVETVHCSACSVYIPALHSS
VQLHLKSPDHSKGKQAYKEQIKRESVLTATSILNNPIVKARYERFVKGENPFEIQDHPQDQQIEGDEEDE
EKIGEPIEEEEEEEEEEEEEGEEAGSVEEEGDVEGEEGTAEAAAAGEADAVGEAEGAGEAEEAEEEEEEE
GTQEFAAQACATEQCEHRQM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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