NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37665.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37665.1 Public Mus musculus 17 Rpl36 23 108 98 CCDS HistoryNCBI Gene:54217Re-query CCDS DB by CCDS ID:37665.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37665.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080492.6 ENSMUSP00000079340.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080492.6Link to Ensembl Protein Viewer:ENSMUSP00000079340.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000080492Re-query CCDS DB by Protein ID:ENSMUSP00000079340
Original member Current member NCBI NM_018730.3 NP_061200.2 Accepted alive Link to Nucleotide Sequence:NM_018730.3Link to Protein Sequence:NP_061200.2Re-query CCDS DB by Nucleotide ID:NM_018730Re-query CCDS DB by Protein ID:NP_061200Link to BLAST:NP_061200.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061200.2 105 P47964 105 100% 0 0

Chromosomal Locations for CCDS 37665.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 56613588 56613680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56613907 56614041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56614124 56614213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (318 nt):
ATGGCTCTGCGCTACCCCATGGCCGTGGGCCTCAACAAGGGCCACAAGGTGACGAAAAACGTCAGTAAGC
CGAGACACAGCCGGCGACGCGGGCGCCTCACCAAACACACCAAGTTCGTGCGGGACATGATCCGGGAGGT
GTGCGGCTTCGCACCCTACGAGCGGCGAGCCATGGAGTTGCTCAAAGTGTCCAAGGACAAGCGCGCACTC
AAGTTCATCAAGAAGAGGGTGGGCACGCACATCCGCGCCAAGAGAAAGCGGGAGGAGCTGAGCAACGTGC
TGGCAGCCATGAGGAAGGCGGCGGCCAAGAAGGATTGA

Translation (105 aa):
MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRAL
KFIKKRVGTHIRAKRKREELSNVLAAMRKAAAKKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH