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Report for CCDS27360.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27360.1 Public Mus musculus 15 Rimoc1 23 108 98 CCDS HistoryNCBI Gene:106064Re-query CCDS DB by CCDS ID:27360.1Re-query CCDS DB by GeneID:106064See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27360.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046633.9 ENSMUSP00000038476.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046633.9Link to Ensembl Protein Viewer:ENSMUSP00000038476.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000046633Re-query CCDS DB by Protein ID:ENSMUSP00000038476
Original member Current member NCBI NM_145930.3 NP_666042.2 Accepted alive Link to Nucleotide Sequence:NM_145930.3Link to Protein Sequence:NP_666042.2Re-query CCDS DB by Nucleotide ID:NM_145930Re-query CCDS DB by Protein ID:NP_666042Link to BLAST:NP_666042.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666042.2 294 Q8BR90-1 294 100% 0 0

Chromosomal Locations for CCDS 27360.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 3986196 3986479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 3988591 3988705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 3989555 3989686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 3991718 3991864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 3992358 3992464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 3995615 3995714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (885 nt):
ATGGCGGCCGCGGTGTCCGGTGTGGTGAGGCGGGTGGAAGAGCTCGGGGACCTGGCTCAGGCTCACATAC
AGCACCTTAGCGAAGCCGCGGGGGAAGACGATCACTTTTTAATTCGAGCCTCTGCAGCTCTAGAAAAATT
GAAACTTTTATGTGGAGAAGAGAAAGAATGTTCAAATCCATCCAATCTTTTGGAACTATATACACAGGCC
ATCCTGGACATGACATATTTTGAGGAGAACAAGCTAGTAGATGAGGATTTTCCAGAGGACTGTTCTCCAC
AGAAAGTAAAAGAGCTGCTCGCGTTTCTTTCAGAACCAGAAATCTTAGCTAAAGAAAGCAATATGCATCC
CAAGCTGTGCGGTTTGCTTGGGGCTGAGCTCCTGGAGTGCCTCTCTTGGAGGCGAGGGGCCCTGCTGTAC
ATGTATTGTCATTCGCTGACTAAGAGAAGGGAGTGGCTCCTCAGAAAATCCAACTTGCTTCAAAAGTACC
TTGTTGATGGGATCAATTACTTGCTACAGATGCTAAATTATCGATGCCCTGTCCAGTTAAATGAAGGTGT
TTCTTTCCAAGACCTAGACACAGCTAAATTGCTGAGTACAGGAGTCTTTAGTGACATCCATGTGCTGGCT
ATGATGTACAGTGGAGAGATGTGCTACTGGGGGTTAAAGCACTGCACAGATCAGCAGTCAGAAAACCATG
AAGTTGATACTGATGTTTTTGGAGCAAGCTGCACCACACACAAAGAAACCTTGGATTTCCGAGAAGTAGG
AGAAAAAATTTTGAAGAAGTATGTGTCGGTGTGTGAAGGACCTCTGAAGGAGCAAGAGTGGAACACCGCA
AACGCAAAGCAAATCTTAAGTTTCTTTCAGCAGCGCTGTAGCTAG

Translation (294 aa):
MAAAVSGVVRRVEELGDLAQAHIQHLSEAAGEDDHFLIRASAALEKLKLLCGEEKECSNPSNLLELYTQA
ILDMTYFEENKLVDEDFPEDCSPQKVKELLAFLSEPEILAKESNMHPKLCGLLGAELLECLSWRRGALLY
MYCHSLTKRREWLLRKSNLLQKYLVDGINYLLQMLNYRCPVQLNEGVSFQDLDTAKLLSTGVFSDIHVLA
MMYSGEMCYWGLKHCTDQQSENHEVDTDVFGASCTTHKETLDFREVGEKILKKYVSVCEGPLKEQEWNTA
NAKQILSFFQQRCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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