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Report for CCDS29342.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29342.1 Public Mus musculus 18 Acaa2 23 108 98 CCDS HistoryNCBI Gene:52538Re-query CCDS DB by CCDS ID:29342.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29342.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041053.10 ENSMUSP00000037348.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041053.10Link to Ensembl Protein Viewer:ENSMUSP00000037348.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000041053Re-query CCDS DB by Protein ID:ENSMUSP00000037348
Original member Current member NCBI NM_177470.3 NP_803421.1 Accepted alive Link to Nucleotide Sequence:NM_177470.3Link to Protein Sequence:NP_803421.1Re-query CCDS DB by Nucleotide ID:NM_177470Re-query CCDS DB by Protein ID:NP_803421Link to BLAST:NP_803421.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_803421.1 397 Q8BWT1 397 100% 0 0

Chromosomal Locations for CCDS 29342.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 74779250 74779265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74787119 74787285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74792351 74792479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74793287 74793403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74795131 74795278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74798312 74798487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74799045 74799174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74801297 74801367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74804001 74804155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74805855 74805939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGGCCCTGCTACGAGGTGTGTTCATCGTCGCTGCGAAGCGAACACCCTTTGGAGCTTACGGGGGCCTTC
TCAAGGACTTCTCTGCCACCGATTTAACTGAATTTGCTGCCAGGGCTGCTCTGTCTGCTGGCAAAGTTCC
ACCTGAAACCATCGATAGTGTCATCGTGGGCAATGTCATGCAGAGCTCTTCAGATGCGGCATACCTGGCG
AGGCATGTGGGTTTGCGAGTGGGAGTCCCAACAGAGACTGGGGCCCTTACCCTCAACAGGCTCTGTGGCT
CTGGTTTCCAGTCCATCGTGAGCGGATGTCAGGAAATCTGTTCTAAAGATGCTGAGGTCGTCTTGTGTGG
AGGAACAGAGAGCATGAGCCAGTCCCCCTACTGTGTCAGAAATGTGCGCTTCGGAACCAAATTTGGATTA
GATCTCAAGCTGGAAGATACTTTGTGGGCAGGATTAACGGATCAACATGTTAAGCTGCCCATGGGAATGA
CTGCAGAGAACCTTGCTGCAAAATACAACATAAGCAGAGAAGACTGTGACAGATACGCCTTGCAGTCTCA
GCAGAGGTGGAAAGCTGCTAACGAGGCTGGCTACTTCAATGAGGAGATGGCACCCATTGAGGTGAAGACG
AAGAAAGGCAAACAGACCATGCAAGTGGACGAGCACGCTCGACCCCAAACCACCCTGGAGCAACTGCAGA
AGCTCCCGTCCGTGTTCAAGAAAGACGGGACAGTCACAGCAGGGAACGCCTCGGGGGTGTCTGACGGTGC
TGGGGCCGTCATCATAGCCAGCGAAGATGCTGTCAAAAAACATAACTTCACGCCCCTGGCCAGAGTCGTG
GGCTACTTCGTGTCCGGATGCGATCCTACTATCATGGGTATTGGTCCAGTCCCTGCTATCAATGGAGCAT
TGAAGAAAGCTGGGCTGAGTCTTAAGGACATGGATTTGATAGACGTGAACGAAGCTTTTGCCCCTCAGTT
CTTGTCTGTTCAGAAGGCCCTGGATCTTGACCCCAGCAAAACCAATGTGAGTGGAGGCGCCATTGCCCTG
GGTCACCCGCTGGGAGGATCTGGCTCCAGAATCACCGCACACCTGGTTCATGAGTTAAGGCGTCGAGGTG
GAAAGTACGCAGTGGGATCAGCTTGCATTGGAGGTGGCCAAGGCATCGCCTTGATCATCCAGAACACAGC
CTGA

Translation (397 aa):
MALLRGVFIVAAKRTPFGAYGGLLKDFSATDLTEFAARAALSAGKVPPETIDSVIVGNVMQSSSDAAYLA
RHVGLRVGVPTETGALTLNRLCGSGFQSIVSGCQEICSKDAEVVLCGGTESMSQSPYCVRNVRFGTKFGL
DLKLEDTLWAGLTDQHVKLPMGMTAENLAAKYNISREDCDRYALQSQQRWKAANEAGYFNEEMAPIEVKT
KKGKQTMQVDEHARPQTTLEQLQKLPSVFKKDGTVTAGNASGVSDGAGAVIIASEDAVKKHNFTPLARVV
GYFVSGCDPTIMGIGPVPAINGALKKAGLSLKDMDLIDVNEAFAPQFLSVQKALDLDPSKTNVSGGAIAL
GHPLGGSGSRITAHLVHELRRRGGKYAVGSACIGGGQGIALIIQNTA


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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