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Report for CCDS28928.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28928.1 Public Mus musculus 17 Tnfsf14 23 108 98 CCDS HistoryNCBI Gene:50930Re-query CCDS DB by CCDS ID:28928.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28928.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005976.7 ENSMUSP00000005976.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005976.7Link to Ensembl Protein Viewer:ENSMUSP00000005976.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000005976Re-query CCDS DB by Protein ID:ENSMUSP00000005976
Original member NCBI NM_019418.3 NP_062291.1 Updated not alive Link to Nucleotide Sequence:NM_019418.3Link to Protein Sequence:NP_062291.1Re-query CCDS DB by Nucleotide ID:NM_019418Re-query CCDS DB by Protein ID:NP_062291
Current member NCBI NM_019418.4 NP_062291.1 Accepted alive Link to Nucleotide Sequence:NM_019418.4Link to Protein Sequence:NP_062291.1Re-query CCDS DB by Nucleotide ID:NM_019418Re-query CCDS DB by Protein ID:NP_062291Link to BLAST:NP_062291.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062291.1 239 Q9QYH9 239 100% 0 0

Chromosomal Locations for CCDS 28928.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 57190511 57190938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57192559 57192600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57192903 57192939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57193857 57194069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (720 nt):
ATGGAGAGTGTGGTACAGCCTTCAGTGTTTGTGGTGGATGGACAGACGGACATCCCATTCAGGCGGCTGG
AACAGAACCACCGGAGACGGCGCTGTGGCACTGTCCAGGTCAGCCTGGCCCTGGTGCTGCTGCTAGGTGC
TGGGCTGGCCACTCAGGGCTGGTTTCTCCTGAGACTGCATCAACGTCTTGGAGACATAGTAGCTCATCTG
CCAGATGGAGGCAAAGGCTCCTGGGAGAAGCTGATACAAGATCAACGATCTCACCAGGCCAACCCAGCAG
CACATCTTACAGGAGCCAACGCCAGCTTGATAGGTATTGGTGGACCTCTGTTATGGGAGACACGACTTGG
CCTGGCCTTCTTGAGGGGCTTGACGTATCATGATGGGGCCCTGGTGACCATGGAGCCCGGTTACTACTAT
GTGTACTCCAAAGTGCAGCTGAGCGGCGTGGGCTGCCCCCAGGGGCTGGCCAATGGCCTCCCCATCACCC
ATGGACTATACAAGCGCACATCCCGCTACCCGAAGGAGTTAGAACTGCTGGTCAGTCGGCGGTCACCCTG
TGGCCGGGCCAACAGCTCCCGAGTCTGGTGGGACAGCAGCTTCCTGGGCGGCGTGGTACATCTGGAGGCT
GGGGAAGAGGTGGTGGTCCGCGTGCCTGGAAACCGCCTGGTCAGACCACGTGACGGCACCAGGTCCTATT
TCGGAGCTTTCATGGTCTGA

Translation (239 aa):
MESVVQPSVFVVDGQTDIPFRRLEQNHRRRRCGTVQVSLALVLLLGAGLATQGWFLLRLHQRLGDIVAHL
PDGGKGSWEKLIQDQRSHQANPAAHLTGANASLIGIGGPLLWETRLGLAFLRGLTYHDGALVTMEPGYYY
VYSKVQLSGVGCPQGLANGLPITHGLYKRTSRYPKELELLVSRRSPCGRANSSRVWWDSSFLGGVVHLEA
GEEVVVRVPGNRLVRPRDGTRSYFGAFMV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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