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Report for CCDS23342.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23342.1 Public Mus musculus 9 Mapk6 23 108 98 CCDS HistoryNCBI Gene:50772Re-query CCDS DB by CCDS ID:23342.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23342.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049355.10 ENSMUSP00000040315.10 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049355.10Link to Ensembl Protein Viewer:ENSMUSP00000040315.10Re-query CCDS DB by Nucleotide ID:ENSMUST00000049355Re-query CCDS DB by Protein ID:ENSMUSP00000040315
Original member Current member EBI ENSMUST00000168937.7 ENSMUSP00000129024.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168937.7Link to Ensembl Protein Viewer:ENSMUSP00000129024.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168937Re-query CCDS DB by Protein ID:ENSMUSP00000129024
Original member Current member NCBI NM_015806.5 NP_056621.4 Accepted alive Link to Nucleotide Sequence:NM_015806.5Link to Protein Sequence:NP_056621.4Re-query CCDS DB by Nucleotide ID:NM_015806Re-query CCDS DB by Protein ID:NP_056621Link to BLAST:NP_056621.4
Original member Current member NCBI NM_027418.2 NP_081694.1 Accepted alive Link to Nucleotide Sequence:NM_027418.2Link to Protein Sequence:NP_081694.1Re-query CCDS DB by Nucleotide ID:NM_027418Re-query CCDS DB by Protein ID:NP_081694Link to BLAST:NP_081694.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056621.4 720 Q61532 720 100% 0 0
NP_081694.1 720 Q61532 720 100% 0 0

Chromosomal Locations for CCDS 23342.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 75388052 75389147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75390167 75390368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75393365 75393529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75395510 75395654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75397579 75398133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2163 nt):
ATGGCAGAGAAATTCGAAAGTCTCATGAACATTCATGGCTTTGATCTGGGCTCTAGGTACATGGACTTAA
AACCATTGGGCTGCGGAGGCAATGGCTTGGTCTTTTCTGCTGTAGACAATGACTGTGACAAAAGAGTAGC
CATCAAGAAAATTGTCCTCACCGATCCCCAGAGTGTCAAACATGCTCTCCGTGAAATCAAAATTATTCGA
AGACTTGACCACGATAACATTGTGAAAGTGTTTGAAATTCTTGGTCCCAGTGGAAGCCAGTTAACAGACG
ATGTGGGCTCTCTCACGGAGCTGAATAGCGTCTACATTGTTCAGGAGTATATGGAGACAGACTTGGCGAA
TGTGCTGGAGCAGGGCCCTTTACTGGAAGAGCATGCCAGGCTTTTCATGTATCAGCTGCTACGTGGGCTC
AAATATATCCATTCTGCAAACGTACTGCACAGAGATCTCAAGCCAGCTAATCTTTTCATTAACACTGAAG
ACTTGGTGCTGAAGATAGGTGACTTTGGCCTGGCACGGATCATGGATCCTCATTATTCCCATAAGGGTCA
TCTTTCTGAAGGATTGGTTACCAAATGGTACAGATCTCCACGGCTTTTACTTTCTCCTAATAATTACACT
AAAGCCATTGACATGTGGGCTGCAGGCTGCATCTTTGCTGAGATGCTGACTGGTAAAACCCTCTTTGCAG
GTGCACATGAACTTGAACAGATGCAGCTGATCCTCGACTCCATCCCTGTTGTGCACGAGGAGGATCGGCA
GGAGCTTCTCAGCGTGATTCCAGTTTACATTAGAAACGACATGACTGAGCCACACAGACCGCTCACTCAG
CTGCTGCCGGGGATCAGCCGAGAAGCACTGGATTTCCTGGAGCAGATTCTGACTTTCAGCCCCATGGACC
GGCTGACAGCTGAGGAAGCCCTTTCCCATCCTTACATGAGCATCTACTCCTTCCCGACGGATGAGCCCAT
CTCAAGCCACCCTTTCCACATAGAGGACGAAGTGGACGACATTTTGCTTATGGATGAAACACACAGTCAC
ATTTATAACTGGGAAAGGTACCACGATTGTCAGTTCTCGGAGCATGACTGGCCTATTCATAACAACTTTG
ATATCGATGAGGTGCAGCTTGACCCAAGAGCTCTGTCTGACGTCACCGATGAAGAAGAAGTCCAAGTTGA
TCCTCGAAAATACTTGGATGGAGACCGAGAGAAGTATCTAGAGGATCCCGCCTTCGACACCAGCTACTCT
GCTGAACCCTGCTGGCAGTACCCAGATCACCACGAGAACAAGTACTGCGATCTGGAGTGTAGCCACACCT
GTAACTACAAAACAAGATCATCACCATACTTAGATAACCTGGTGTGGAGGGAGAGCGAGGTTAACCATTA
CTATGAGCCCAAGCTTATTATAGATCTTTCCAACTGGAAAGAGCAAAGTAAAGAAAAATCCGATAAGAGA
GGCAAGTCCAAGTGTGAGAGGAACGGGTTGGTCAAGGCGCAGATCGCGCTAGAGGAAGCATCCCAGCAGC
TGGCTGAGAGGGAGAGGGGCCAAGGCTTCGACTTTGACTCCTTCATCGCGGGGACCATTCAGCTCAGTGC
CCAGCATCAGTCTGCTGACGTAGTTGACAAGTTAAACGACTTGAATAGCTCAGTGTCCCAGCTAGAATTG
AAAAGCCTGATATCCAAGTCAGTCAGCCGAGAAAAGCAAGAAAAGGGAAGGGCTAACCTGGCCCAGCTGG
GAGCCTTGTACCAGTCCTCCTGGGACAGCCAGTTTGTGAGTGGCGGGGAGGAGTGCTTCCTCATCAGTCA
GTTTTGTTGTGAGGTCAGGAAGGACGAGCATGCGGAGAAGGAGAACACCTACACCAGCTATTTGGACAAG
TTTTTTAGCAGGAAGGAGGATTCCGAAATGCTAGAAACTGAGCCAGTGGAGGAAGGGAAGCGTGGGGAGA
GAGGCCGTGAGGCAGGGCTTCTGAGCGGCGGTGGGGAGTTCCTCCTGAGCAAGCAGCTGGAGTCCATAGG
CACCCCGCAGTTCCACAGCCCAGTGGGGTCCCCACTCAAGTCCATCCAGGCCACCTTGACACCTTCCGCT
ATGAAATCTTCCCCTCAAATCCCTCACAAGACATACAGCAGCATTCTGAAACATCTGAACTAA

Translation (720 aa):
MAEKFESLMNIHGFDLGSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIR
RLDHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYMETDLANVLEQGPLLEEHARLFMYQLLRGL
KYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYT
KAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILDSIPVVHEEDRQELLSVIPVYIRNDMTEPHRPLTQ
LLPGISREALDFLEQILTFSPMDRLTAEEALSHPYMSIYSFPTDEPISSHPFHIEDEVDDILLMDETHSH
IYNWERYHDCQFSEHDWPIHNNFDIDEVQLDPRALSDVTDEEEVQVDPRKYLDGDREKYLEDPAFDTSYS
AEPCWQYPDHHENKYCDLECSHTCNYKTRSSPYLDNLVWRESEVNHYYEPKLIIDLSNWKEQSKEKSDKR
GKSKCERNGLVKAQIALEEASQQLAERERGQGFDFDSFIAGTIQLSAQHQSADVVDKLNDLNSSVSQLEL
KSLISKSVSREKQEKGRANLAQLGALYQSSWDSQFVSGGEECFLISQFCCEVRKDEHAEKENTYTSYLDK
FFSRKEDSEMLETEPVEEGKRGERGREAGLLSGGGEFLLSKQLESIGTPQFHSPVGSPLKSIQATLTPSA
MKSSPQIPHKTYSSILKHLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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