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Report for CCDS21058.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21058.1 Public Mus musculus 7 Lgals4 23 108 98 CCDS HistoryNCBI Gene:16855Re-query CCDS DB by CCDS ID:21058.1Re-query CCDS DB by GeneID:16855See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21058.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066723.14 ENSMUSP00000066461.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066723.14Link to Ensembl Protein Viewer:ENSMUSP00000066461.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000066723Re-query CCDS DB by Protein ID:ENSMUSP00000066461
Original member NCBI NM_010706.2 NP_034836.1 Updated not alive Link to Nucleotide Sequence:NM_010706.2Link to Protein Sequence:NP_034836.1Re-query CCDS DB by Nucleotide ID:NM_010706Re-query CCDS DB by Protein ID:NP_034836
Current member NCBI NM_010706.3 NP_034836.1 Accepted alive Link to Nucleotide Sequence:NM_010706.3Link to Protein Sequence:NP_034836.1Re-query CCDS DB by Nucleotide ID:NM_010706Re-query CCDS DB by Protein ID:NP_034836Link to BLAST:NP_034836.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034836.1 326 Q8K419 326 100% 0 0

Chromosomal Locations for CCDS 21058.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 28834182 28834226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28834448 28834536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28835827 28836031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28837616 28837756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28840262 28840294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28840414 28840452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28840581 28840610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28840864 28840952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28841145 28841307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28841487 28841633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGGCCTATGTTCCAGCACCGGGCTACCAGCCCACCTACAATCCGACTCTGCCCTACAAGAGACCCATCC
CAGGTGGCCTCAGTGTCGGGATGTCCGTTTACATCCAAGGAATGGCCAAAGAGAACATGAGACGGTTCCA
CGTGAACTTCGCTGTGGGGCAGGATGATGGGGCGGATGTTGCTTTCCACTTCAATCCCCGCTTTGATGGC
TGGGACAAGGTGGTCTTCAACACGATGCAAAGTGGACAATGGGGCAAGGAAGAGAAGAAGAAGAGCATGC
CTTTCCAGAAGGGCAAGCACTTCGAGCTGGTGTTCATGGTCATGCCTGAGCACTACAAGGTCGTGGTGAA
CGGAAATTCCTTCTATGAATACGGGCACCGGTTACCTGTACAGATGGTCACCCATCTGCAAGTGGATGGG
GACCTGGAACTTCAGTCCATCAACTTCCTCGGAGGCCAACCAGCTGCAGCCCCATATCCGGGAGCCATGA
CTATTCCAGCTTACCCTGCTGGGAGTCCTGGGTACAACCCTCCACAGATGAACACCTTGCCTGTCATGAC
AGGACCCCCAGTCTTCAATCCGCGTGTGCCATATGTGGGGGCTCTGCAGGGGGGCCTTACAGTCCGAAGA
ACCATCATAATCAAGGGATATGTACTTCCTACAGCCAGGAACTTTGTCATCAACTTCAAGGTGGGATCGT
CCGGAGACATAGCTTTACACCTAAACCCCCGCATAGGTGACAGTGTGGTTCGCAACAGCTTTATGAATGG
CTCTTGGGGCGCTGAAGAGAGGAAGGTGGCCTACAACCCATTTGGCCCTGGGCAGTTCTTTGATCTGTCA
ATCCGCTGCGGCATGGATCGATTCAAGGTGTTTGCCAATGGCCAGCACCTTTTCGACTTCTCCCATCGGT
TCCAAGCATTCCAAATGGTAGACACGCTGGAGATCAATGGTGACATCACCTTGTCCTACGTCCAGATCTG
A

Translation (326 aa):
MAYVPAPGYQPTYNPTLPYKRPIPGGLSVGMSVYIQGMAKENMRRFHVNFAVGQDDGADVAFHFNPRFDG
WDKVVFNTMQSGQWGKEEKKKSMPFQKGKHFELVFMVMPEHYKVVVNGNSFYEYGHRLPVQMVTHLQVDG
DLELQSINFLGGQPAAAPYPGAMTIPAYPAGSPGYNPPQMNTLPVMTGPPVFNPRVPYVGALQGGLTVRR
TIIIKGYVLPTARNFVINFKVGSSGDIALHLNPRIGDSVVRNSFMNGSWGAEERKVAYNPFGPGQFFDLS
IRCGMDRFKVFANGQHLFDFSHRFQAFQMVDTLEINGDITLSYVQI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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