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Report for CCDS22284.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22284.1 Public Mus musculus 8 Ufsp2 23 108 98 CCDS HistoryNCBI Gene:192169Re-query CCDS DB by CCDS ID:22284.1Re-query CCDS DB by GeneID:192169See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22284.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034051.6 ENSMUSP00000034051.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034051.6Link to Ensembl Protein Viewer:ENSMUSP00000034051.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000034051Re-query CCDS DB by Protein ID:ENSMUSP00000034051
Original member Current member NCBI NM_138668.2 NP_619609.1 Accepted alive Link to Nucleotide Sequence:NM_138668.2Link to Protein Sequence:NP_619609.1Re-query CCDS DB by Nucleotide ID:NM_138668Re-query CCDS DB by Protein ID:NP_619609Link to BLAST:NP_619609.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_619609.1 461 Q99K23 461 100% 0 0

Chromosomal Locations for CCDS 22284.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 45979232 45979295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45980315 45980492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45980573 45980639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45983523 45983680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45984041 45984233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45985322 45985468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45991748 45991912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45992108 45992232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45994015 45994091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45995538 45995662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45996702 45996788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGGATATACTCTTCAGAATAAGAGGCGGCTTCGATCTGGCTTTTCAGCTAGCACCACCTAAAGAAATGT
TTATCAAGAACGCACTGAGACAGGTGTTGAGCGACCTGACTACCAAGCTCTCCTCAGATGCTCTTGTGCT
CAGAGTTTGCAACAGCTCCGTGTACCTGTGGCCGAACAGCGACGCAAACACGGGGGAGCTGACTGACAGC
TCTGCCTGTAAGAACGTAGTGCGCTTCATTCAATTTGATCAAGAGGAGGATACAAAGCGAAAATTCATTA
AAAAGAAAGACAAAAAGTTAACTGACACGCAACAGATAGTAAATATAGACCTCATGCTGGAGATATCGAC
CCCTCTGGGAGCCGTAACCCCCATCCTGGAGAGGGAAAATGAAGAGCACCACTACATTAACATGAGCTTG
CCAATTGACGCCGTTGTGTCTGTTGCTCCAGAGGAATCATGGGGAAAAGTGCGCAAACTTCTAGTGGATG
CAATTCTCAGGCAGCTAGTTGATGTGGAAAAATGCATCCTGAGATATATGAAAGGAACGTCTATTGTGGT
CCCCGAGCCACTGCACTTTCAATTGCCAGGGAAAAAGAATCTTGTAACGGTTTTATATCCATCAGGAATC
CCAGATGATCAGCTCCAAGCCTATCGAAAGGAGTTACATGATCTCTTCAATCTGCCTCATGACAGACCTT
ATTTCAAAAGGATCAATGCTTATCACTTTCCAGATGAACTATATAAAGATGGCTATATCAGAAACCCACA
TACTTATCTGAGTCCACCTAACATAGAGGGTAGTATGATTTGTGTGGTCCAGGGCACCTATGCTTATCAT
CATTATATGCAAGATCGGATTGATGACAATGGTTGGGGCTGTGCTTATAGGTCCCTACAGACTATCTGCT
CATGGTTCAGACATCAGGGTTACACAGAGAGGTCCATTCCCACACACAGGGAAATTCAGCAGGCTCTAGT
TGATGCCGGCGACAAGCCAGCAACATTTGTTGGATCACGGCAGTGGATTGGGTCTATTGAAGTACAGATG
GTACTAAACCAACTGATTGGTGTGACTTCGAAAATACTGTTTGTCAACCAAGGTTCAGAAATGGCTTCTC
AAGGACGGGAACTAGCCAACCATTTCCAGAATGTGGGCACCCCAGTGATGGTCGGGGGAGGGGTATTGGC
TCACACAATACTAGGAGTCGCATGGAATGAAACCACGGGGCAGATAAAATTCCTGATTCTAGACCCACAC
TATACAGGTGCTGAAGACCTGCAGGTTATGTTGGAAAAGGGCTGGTGTGGATGGAAGAGTCCAGACTTTT
GGAACAAGGATGCATACTATAACTTATGCCTTCCTCAACGACCTAATGCTCTTTAA

Translation (461 aa):
MDILFRIRGGFDLAFQLAPPKEMFIKNALRQVLSDLTTKLSSDALVLRVCNSSVYLWPNSDANTGELTDS
SACKNVVRFIQFDQEEDTKRKFIKKKDKKLTDTQQIVNIDLMLEISTPLGAVTPILERENEEHHYINMSL
PIDAVVSVAPEESWGKVRKLLVDAILRQLVDVEKCILRYMKGTSIVVPEPLHFQLPGKKNLVTVLYPSGI
PDDQLQAYRKELHDLFNLPHDRPYFKRINAYHFPDELYKDGYIRNPHTYLSPPNIEGSMICVVQGTYAYH
HYMQDRIDDNGWGCAYRSLQTICSWFRHQGYTERSIPTHREIQQALVDAGDKPATFVGSRQWIGSIEVQM
VLNQLIGVTSKILFVNQGSEMASQGRELANHFQNVGTPVMVGGGVLAHTILGVAWNETTGQIKFLILDPH
YTGAEDLQVMLEKGWCGWKSPDFWNKDAYYNLCLPQRPNAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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