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Report for CCDS14629.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14629.1 Public Homo sapiens X IGSF1 24 110 108 CCDS HistoryNCBI Gene:3547Re-query CCDS DB by CCDS ID:14629.1Re-query CCDS DB by GeneID:3547See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14629.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361420.8 ENSP00000355010.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361420.8Link to Ensembl Protein Viewer:ENSP00000355010.3Re-query CCDS DB by Nucleotide ID:ENST00000361420Re-query CCDS DB by Protein ID:ENSP00000355010
Original member Current member EBI ENST00000651556.1 ENSP00000498789.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000651556.1Link to Ensembl Protein Viewer:ENSP00000498789.1Re-query CCDS DB by Nucleotide ID:ENST00000651556Re-query CCDS DB by Protein ID:ENSP00000498789
Original member Current member NCBI NM_001555.5 NP_001546.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001555.5Link to Protein Sequence:NP_001546.2Re-query CCDS DB by Nucleotide ID:NM_001555Re-query CCDS DB by Protein ID:NP_001546Link to BLAST:NP_001546.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001546.2 1336 Q8N6C5-1 1336 100% 0 0

Chromosomal Locations for CCDS 14629.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 131273796 131273931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131274083 131274206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131274599 131274877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131274999 131275286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131275478 131275765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131275961 131276248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131276939 131277226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131277856 131278134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131278461 131278751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131279143 131279175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131279271 131279341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131281218 131281338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131281666 131281944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131282444 131282737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131282980 131283264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131285179 131285466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131285767 131286048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131286437 131286463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131286605 131286674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4011 nt):
ATGACCCTGGACAGACCAGGGGAGGGGGCCACCATGCTGAAGACATTCACTGTTTTGCTCTTTTGCATTC
GGATGAGTCTGGGTATGACATCAATAGTGATGGACCCTCAACCAGAGTTGTGGATAGAGTCCAACTACCC
CCAGGCCCCTTGGGAGAACATCACGCTTTGGTGCCGAAGCCCCTCTCGGATATCAAGCAAGTTCCTGCTG
CTGAAGGATAAGACACAGATGACCTGGATCCGCCCTTCCCACAAGACCTTCCAAGTTTCATTCCTTATAG
GTGCCCTTACTGAGTCCAATGCAGGTCTTTACCGGTGCTGCTACTGGAAGGAGACAGGCTGGTCAAAGCC
CAGTAAAGTTCTAGAGTTGGAGGCACCAGGCCAACTGCCCAAGCCCATCTTCTGGATTCAGGCTGAGACC
CCCGCTCTTCCTGGGTGTAATGTTAACATCCTCTGCCATGGCTGGCTGCAGGATTTGGTATTCATGCTGT
TTAAAGAGGGATATGCAGAGCCTGTGGATTACCAAGTCCCAACTGGGACAATGGCCATATTCTCCATTGA
CAACCTGACACCTGAGGATGAAGGGGTTTACATCTGCCGCACTCATATCCAGATGCTCCCCACCCTGTGG
TCAGAGCCCAGCAACCCCCTGAAGCTGGTTGTAGCAGGACTCTACCCCAAACCAACTTTGACAGCCCATC
CTGGGCCCATCATGGCACCTGGAGAAAGCCTGAATCTCAGGTGCCAAGGGCCAATCTATGGAATGACCTT
TGCTCTAATGAGGGTTGAAGACTTGGAGAAGTCCTTTTACCACAAGAAGACAATAAAAAATGAGGCAAAT
TTCTTCTTCCAGTCTTTGAAGATCCAAGATACTGGACATTACCTCTGTTTTTACTATGACGCATCATATA
GAGGTTCACTCCTTAGTGATGTCCTGAAAATCTGGGTGACTGACACTTTCCCCAAGACCTGGCTACTTGC
TCGGCCCAGTGCTGTGGTCCAAATGGGTCAGAATGTGAGCCTACGGTGTCGAGGACCAGTGGATGGAGTG
GGTCTTGCACTCTATAAGAAAGGAGAAGACAAACCACTTCAATTTTTGGATGCCACCAGCATCGATGACA
ACACATCATTCTTCCTCAACAATGTAACCTACAGTGATACTGGCATCTATAGCTGCCACTATCTTCTCAC
CTGGAAGACCTCCATTAGGATGCCATCACACAACACTGTGGAGCTTATGGTTGTAGATAAGCCCCCCAAA
CCCTCCCTGTCAGCTTGGCCAAGCACTGTGTTCAAGCTAGGAAAGGCCATCACCCTTCAGTGCCGAGTAT
CTCATCCAGTACTGGAATTTTCTCTGGAATGGGAAGAAAGAGAAACATTCCAAAAATTCTCAGTAAACGG
AGACTTCATCATCAGTAATGTTGACGGGAAAGGCACAGGGACCTACAGTTGCAGCTATCGCGTAGAGACA
CATCCTAACATCTGGTCACATCGCAGTGAGCCCCTGAAGCTGATGGGGCCAGCAGGCTATCTCACCTGGA
ATTACGTTCTGAATGAAGCTATCAGGTTGTCTCTAATCATGCAGCTTGTTGCCTTGCTGTTGGTAGTGCT
GTGGATAAGGTGGAAGTGTCGGAGACTCAGAATCAGAGAAGCCTGGTTGCTGGGAACAGCTCAAGGGGTC
ACCATGCTCTTCATAGTCACGGCCCTTCTCTGCTGTGGACTGTGCAATGGGGTATTGATAGAAGAGACTG
AAATAGTCATGCCAACCCCTAAGCCTGAGCTGTGGGCAGAGACCAACTTTCCTCTGGCCCCGTGGAAGAA
CTTAACCCTCTGGTGCAGAAGCCCTTCTGGCTCAACTAAGGAGTTTGTGTTGCTGAAGGATGGGACCGGG
TGGATCGCCACTCGCCCGGCCTCAGAGCAGGTCCGGGCTGCCTTCCCCCTTGGCGCCCTGACCCAGAGCC
ACACCGGGAGCTACCACTGCCATTCATGGGAGGAGATGGCTGTATCGGAGCCCAGTGAGGCACTTGAGCT
GGTGGGGACAGACATCCTCCCCAAACCTGTCATTTCTGCTTCCCCCACAATCCGGGGCCAGGAACTACAA
CTCCGGTGCAAAGGATGGCTGGCAGGCATGGGGTTTGCTCTGTATAAGGAGGGAGAGCAAGAACCTGTCC
AGCAACTTGGTGCTGTTGGAAGAGAAGCCTTCTTTACAATCCAGAGAATGGAGGATAAAGACGAAGGCAA
TTACAGCTGCCGCACTCACACTGAAAAACGCCCCTTCAAGTGGTCTGAGCCCAGTGAGCCGCTGGAGCTT
GTCATAAAAGAAATGTACCCTAAGCCCTTCTTCAAGACATGGGCCAGCCCTGTGGTCACCCCTGGTGCCC
GAGTGACTTTCAATTGCTCCACCCCCCACCAGCATATGAGCTTTATTCTTTACAAAGATGGAAGTGAAAT
AGCATCCAGTGACAGGTCCTGGGCAAGTCCGGGGGCCAGTGCAGCTCACTTTCTAATCATTTCGGTGGGC
ATTGGTGATGGAGGGAATTACAGCTGCCGATATTATGACTTTTCTATCTGGTCTGAGCCCAGCGACCCTG
TGGAGCTCGTGGTGACAGAATTCTACCCCAAACCCACTCTCCTGGCACAGCCAGGTCCTGTGGTGTTTCC
TGGGAAGAGTGTGATCCTGCGCTGCCAAGGGACTTTCCAGGGCATGAGGTTCGCCCTCTTGCAGGAGGGA
GCCCATGTTCCCTTACAGTTTCGGAGTGTCTCAGGGAACTCAGCTGACTTCCTTCTCCACACTGTTGGAG
CAGAGGACTCTGGGAACTATAGCTGTATCTACTATGAGACAACCATGTCAAACAGGGGGTCATATCTCAG
TATGCCCCTTATGATCTGGGTGACTGACACATTCCCTAAGCCATGGTTGTTTGCTGAGCCCAGTTCTGTG
GTTCCCATGGGGCAGAATGTTACTCTCTGGTGCCGAGGGCCGGTCCATGGAGTAGGATACATTCTGCACA
AAGAAGGAGAAGCCACTTCAATGCAGCTCTGGGGATCCACCAGTAATGACGGGGCATTCCCCATCACCAA
TATATCTGGTACTAGCATGGGGCGTTACAGCTGCTGCTACCACCCTGACTGGACCAGTTCTATCAAGATA
CAACCTAGCAACACCCTGGAACTCCTAGTCACAGGCTTACTCCCCAAACCCAGCCTATTAGCCCAGCCTG
GTCCCATGGTGGCCCCTGGCGAAAATATGACTCTTCAGTGTCAAGGGGAACTGCCAGACTCAACATTTGT
CCTGTTGAAGGAGGGGGCTCAGGAGCCTTTAGAGCAACAGAGGCCAAGTGGGTACAGGGCTGACTTCTGG
ATGCCAGCAGTGAGAGGTGAAGACTCTGGGATCTATAGCTGTGTTTATTATTTGGACTCTACTCCCTTTG
CAGCTTCAAATCACAGTGACTCCCTGGAGATCTGGGTGACTGATAAGCCCCCTAAACCCTCTCTGTCAGC
CTGGCCCAGCACCATGTTCAAGTTAGGGAAGGACATCACCCTTCAGTGCCGAGGACCCCTGCCAGGTGTT
GAATTTGTCCTAGAACATGATGGAGAAGAAGCACCTCAGCAGTTTTCAGAGGATGGAGACTTTGTCATCA
ACAACGTAGAAGGAAAAGGCATTGGAAACTACAGCTGCAGCTACCGCCTCCAGGCCTACCCTGATATCTG
GTCAGAGCCTAGTGATCCCCTGGAGCTGGTGGGGGCAGCAGGGCCTGTTGCTCAGGAGTGCACTGTAGGG
AACATTGTCCGAAGTAGCCTAATCGTGGTGGTTGTTGTAGCCTTGGGGGTAGTGCTAGCCATAGAGTGGA
AGAAGTGGCCTCGACTGCGAACCAGAGGCTCAGAGACAGACGGAAGAGACCAGACCATTGCCCTTGAAGA
GTGTAACCAAGAAGGAGAACCAGGCACCCCTGCCAATTCTCCTTCATCAACCTCTCAGAGAATCTCTGTG
GAACTGCCCGTTCCAATATAA

Translation (1336 aa):
MTLDRPGEGATMLKTFTVLLFCIRMSLGMTSIVMDPQPELWIESNYPQAPWENITLWCRSPSRISSKFLL
LKDKTQMTWIRPSHKTFQVSFLIGALTESNAGLYRCCYWKETGWSKPSKVLELEAPGQLPKPIFWIQAET
PALPGCNVNILCHGWLQDLVFMLFKEGYAEPVDYQVPTGTMAIFSIDNLTPEDEGVYICRTHIQMLPTLW
SEPSNPLKLVVAGLYPKPTLTAHPGPIMAPGESLNLRCQGPIYGMTFALMRVEDLEKSFYHKKTIKNEAN
FFFQSLKIQDTGHYLCFYYDASYRGSLLSDVLKIWVTDTFPKTWLLARPSAVVQMGQNVSLRCRGPVDGV
GLALYKKGEDKPLQFLDATSIDDNTSFFLNNVTYSDTGIYSCHYLLTWKTSIRMPSHNTVELMVVDKPPK
PSLSAWPSTVFKLGKAITLQCRVSHPVLEFSLEWEERETFQKFSVNGDFIISNVDGKGTGTYSCSYRVET
HPNIWSHRSEPLKLMGPAGYLTWNYVLNEAIRLSLIMQLVALLLVVLWIRWKCRRLRIREAWLLGTAQGV
TMLFIVTALLCCGLCNGVLIEETEIVMPTPKPELWAETNFPLAPWKNLTLWCRSPSGSTKEFVLLKDGTG
WIATRPASEQVRAAFPLGALTQSHTGSYHCHSWEEMAVSEPSEALELVGTDILPKPVISASPTIRGQELQ
LRCKGWLAGMGFALYKEGEQEPVQQLGAVGREAFFTIQRMEDKDEGNYSCRTHTEKRPFKWSEPSEPLEL
VIKEMYPKPFFKTWASPVVTPGARVTFNCSTPHQHMSFILYKDGSEIASSDRSWASPGASAAHFLIISVG
IGDGGNYSCRYYDFSIWSEPSDPVELVVTEFYPKPTLLAQPGPVVFPGKSVILRCQGTFQGMRFALLQEG
AHVPLQFRSVSGNSADFLLHTVGAEDSGNYSCIYYETTMSNRGSYLSMPLMIWVTDTFPKPWLFAEPSSV
VPMGQNVTLWCRGPVHGVGYILHKEGEATSMQLWGSTSNDGAFPITNISGTSMGRYSCCYHPDWTSSIKI
QPSNTLELLVTGLLPKPSLLAQPGPMVAPGENMTLQCQGELPDSTFVLLKEGAQEPLEQQRPSGYRADFW
MPAVRGEDSGIYSCVYYLDSTPFAASNHSDSLEIWVTDKPPKPSLSAWPSTMFKLGKDITLQCRGPLPGV
EFVLEHDGEEAPQQFSEDGDFVINNVEGKGIGNYSCSYRLQAYPDIWSEPSDPLELVGAAGPVAQECTVG
NIVRSSLIVVVVVALGVVLAIEWKKWPRLRTRGSETDGRDQTIALEECNQEGEPGTPANSPSSTSQRISV
ELPVPI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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