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Report for CCDS25057.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25057.1 Public Mus musculus 11 Doc2b 23 108 98 CCDS HistoryNCBI Gene:13447Re-query CCDS DB by CCDS ID:25057.1Re-query CCDS DB by GeneID:13447See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25057.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021209.7 ENSMUSP00000021209.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021209.7Link to Ensembl Protein Viewer:ENSMUSP00000021209.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021209Re-query CCDS DB by Protein ID:ENSMUSP00000021209
Original member Current member NCBI NM_007873.3 NP_031899.2 Accepted alive Link to Nucleotide Sequence:NM_007873.3Link to Protein Sequence:NP_031899.2Re-query CCDS DB by Nucleotide ID:NM_007873Re-query CCDS DB by Protein ID:NP_031899Link to BLAST:NP_031899.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031899.2 412 P70169 412 100% 0 0

Chromosomal Locations for CCDS 25057.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 75771932 75772068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75772523 75772619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75773539 75773620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75777000 75777157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75780039 75780165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75780255 75780364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75781621 75781695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75786093 75786172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75795521 75795893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1239 nt):
ATGACCCTCCGGCGGCGCGGGGAGAAGGCGACCATCAGCATCCAGGAGCATATGGCCATCGACGTGTGTC
CCGGCCCCATTCGGCCTATCAAGCAGATCTCCGATTATTTTCCCCGCTTCCCGCGGGGCCTCCCCCCTAC
CGCCGCGCCCCGCGCCCCCGCGCCCCCGGACGCCCCCGCGCGCTCTCCCGCAGCCAGCGCCAGCCCCCGC
AGCCCCTCCGACGGCGCCCGCGACGACGACGAAGATGTGGACCAGCTCTTCGGAGCCTACGGAGCCAGCC
CAGGCCCCAGCCCCGGCCCCAGCCCCGCGAGGCCGCCCGCCAAGCCCCCCGAGGACGAGCCGGACGTCGA
CGGCTACGAGTCAGACGACTGCACCGCCCTGGGTACGCTGGACTTCAGTCTGCTCTATGACCAGGAGAAC
AACGCACTGCACTGCACCATCAGCAAGGCCAAGGGCCTGAAGCCGATGGACCACAATGGACTGGCTGATC
CCTACGTCAAACTACACCTGCTGCCTGGAGCCAGCAAGGCAAATAAGCTCAGAACAAAAACTCTTCGGAA
CACCCTGAACCCCTCGTGGAACGAGACCCTCACTTATTACGGAATCACGGATGAGGACATGGTCCGAAAG
ACCCTGAGGATCTCCGTGTGTGATGAGGACAAATTCCGCCACAATGAGTTCATTGGAGAGACTCGGGTGC
CCCTGAAGAAGCTGAAGCCCAATCACACCAAGACATTCAGCATCTGCCTGGAGAAGCAGCTGCCGGTGGA
CAAGGCAGAGGACAAGTCTCTGGAAGAGCGAGGCCGCATCCTCATCTCCCTCAAGTACAGCTCACAGAAG
CAGGGCCTGCTGGTGGGCATCGTGCGCTGTGCACACCTGGCTGCCATGGATGCTAATGGCTACTCGGACC
CCTATGTGAAAACATATCTGAAGCCAGATGTAGACAAGAAATCCAAGCATAAGACAGCAGTGAAGAAGAA
AACACTAAACCCAGAATTCAATGAGGAATTCTGTTACGAGATCAAGCATGGAGACCTGGCCAAAAAGACT
CTGGAGGTCACTGTCTGGGATTATGACATTGGAAAATCCAATGATTTCATCGGTGGTGTGGTTCTGGGCA
TCAACGCCAAGGGCGAGCGCCTGAAGCACTGGTTTGACTGCTTGAAGAACAAGGACAAGAGGATTGAGCG
TTGGCACACGCTCACCAATGAGCTCCCAGGGGCTGTACTCAGCGACTGA

Translation (412 aa):
MTLRRRGEKATISIQEHMAIDVCPGPIRPIKQISDYFPRFPRGLPPTAAPRAPAPPDAPARSPAASASPR
SPSDGARDDDEDVDQLFGAYGASPGPSPGPSPARPPAKPPEDEPDVDGYESDDCTALGTLDFSLLYDQEN
NALHCTISKAKGLKPMDHNGLADPYVKLHLLPGASKANKLRTKTLRNTLNPSWNETLTYYGITDEDMVRK
TLRISVCDEDKFRHNEFIGETRVPLKKLKPNHTKTFSICLEKQLPVDKAEDKSLEERGRILISLKYSSQK
QGLLVGIVRCAHLAAMDANGYSDPYVKTYLKPDVDKKSKHKTAVKKKTLNPEFNEEFCYEIKHGDLAKKT
LEVTVWDYDIGKSNDFIGGVVLGINAKGERLKHWFDCLKNKDKRIERWHTLTNELPGAVLSD


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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