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Report for CCDS48666.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48666.1 Public Mus musculus 10 Mybpc1 23 108 98 CCDS HistoryNCBI Gene:109272Re-query CCDS DB by CCDS ID:48666.1Re-query CCDS DB by GeneID:109272See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48666.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121629.7 ENSMUSP00000112615.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121629.7Link to Ensembl Protein Viewer:ENSMUSP00000112615.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121629Re-query CCDS DB by Protein ID:ENSMUSP00000112615
Original member Current member NCBI NM_175418.5 NP_780627.2 Accepted alive Link to Nucleotide Sequence:NM_175418.5Link to Protein Sequence:NP_780627.2Re-query CCDS DB by Nucleotide ID:NM_175418Re-query CCDS DB by Protein ID:NP_780627Link to BLAST:NP_780627.2

Chromosomal Locations for CCDS 48666.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 88519930 88519943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88522967 88523153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88524969 88525105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88526282 88526441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88529425 88529564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88531669 88531864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88533485 88533573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88536315 88536482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88540949 88541083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88542328 88542516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88543718 88543822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88545972 88546131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88548768 88548901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88549257 88549363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88551394 88551556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88553256 88553422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88554664 88554769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88555616 88555740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88558571 88558703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88560224 88560390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88566508 88566564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88568598 88568649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88570539 88570656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88571520 88571668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88573416 88573529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88582007 88582048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88585660 88585695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88604901 88604925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3375 nt):
ATGCCAGAACCCACTAAGAAAGAGGAAAATGAAGTGTCCGCCCCAGCCCCTCCCCCGGAAGAACCAAATA
AAGAGAAAGAGGCGGGAACCGCTCCAGCAAAAGAATGGTCTCTTGGTGAGTCACCTGCTGGCGGGGAAGA
GCAGGACAAACAGAATGCCAACTCCCAGCTGTCCACCCTGTTTGTTGAAAAACCTCAAACCGGATCGGTG
AAAGTTGGTGCAAACATCACCTTTGTAGCCAAAGTTAGGGCTGAAGATCTTCTTAGAAAACCCACTGTCA
AATGGTTCAAGGGGAAATGGATGGATCTGGCCAGCAAAGCCGGGAAACACCTGCAGCTGAAGGAGACCTT
CGAGAGGCAAACTCGGGTATACACATTCGAGATGCAGATCATCAAAGCCAAAGAGAACTACGCAGGGAAT
TATAGGTGTGAGGTCACCTACAAGGATAAATTTGACAGCTGTTCGTTTGATCTTGAAGTCCATGAGTCTA
CTGGGACTACTCCAAACATTGACATCAGATCTGCCTTCAAAAGAAGTGGAGAAGGTCAAGAGGATGCAGG
GGAACTTGACTTTAGTGGTCTCCTGAAACGTAGGGAGGTGAAGCAGCAGGAAGAGGAGCCTGAGATAGAC
GTGTGGGAGCTGCTGAAAAATGCCAACCCCAACGAATACGAGAAGATCGCTTTCCAGTATGGCATCACCG
ACTTGCGTGGCATGCTTAAGCGGCTCAAGCGCATGCGCAGGGTGGAAAAGAAGAGCGCAGCTTTTGCAAA
AATTCTCGATCCTGCATATCAGGTGGATAAAGGAGGCAAAGTGAGATTTGTCGTGGAGTTGGCAGACCCA
AAACTGGAGGTGAAATGGTTTAAAAATGGCCAAGAGATTCGACCCAGCACAAAATACATCTTTGAGCACA
AAGGAAACGAGAGAATCATGTTTATTAATAACTGTTCGCTGACAGATGATTCGGAGTACTATGTGACAGC
TGGAGATGAGAAATGTTCTACTGAGCTCTTTGTAAGAGAGCCTCCAATCATGGTGACTAAGCAGCTGGAA
GACATGAACGCTTACTGTGGGGAGAGGGTAGAGATGGAAGTTGAGGTGTCTGAAGATGACGCCAATGTAA
AATGGTTTAAGAATGGTGAAGAGATCTTCCCTGGTCCAAAGTCAAGATACAAGATTAAAGTTGAAGGCAA
AAAGCACACGTTGATCATAGAAGGGGCAACAAAGGCTGACAGTGCGGAGTACTCAGCCATGACAACCGGG
GGACAATCATCTGCCAAACTCAGCGTTGACTTGAGACCTCTAAAGATCACGACGCCTCTGACGGACCAGA
CAGTAAAACTTGGGAAAGAAGTATGCTTGAAGTGTGAAATCTCTGAAAATGTACCAGGAAAATGGACAAA
AAATGGCCTCCCTGTTCAGGAGGGTGAGCGTCTGAAGGTTGTTCACAAGGGAAGAATCCACAAGTTAGTC
ATAGCCAATGCTCTCATTGAAGATGAAGGTGAATATGTATTTACACCAGATGCCTACAATGTTCCTTTGT
CTGCCAAAGTTCATGTCATCGACCCTCCCAAGATCATCCTGGATGGCCTGGATGCTGATAACACAGTGAC
AGTGATAGCTGGAAGCAAGCTTCGCCTGGAGATTCCTGTCACAGGGGAACCACCTCCCAAAGCCATCTGG
AGCCGAGCAGATAAGGCTATTATGGAAGGCAGTGGTCGGATCAGGGCAGAATCCTACCCTGACAGCAGCA
CACTGGTCATTGACGTGGCAGAGAGAGACGACTCTGGTGTGTACAACATAAATCTGAAAAATGAGGCTGG
AGAAGCACATGCAAGCATCAAGATTAAGGTTGTGGATATCCCTGATCCTCCAGTGGCACCAAATGTGACA
GAAGTGGGAGATGACTGGTGCATCATGAACTGGGAGCCTCCTGCCTATGATGGAGGGTCTCCAATCTTAG
GATACTTTATTGAGAGGAAAAAGAAACAAAGCTCCAGGTGGATGAGACTGAATTTCGATCTCTGCAAAGA
GACAACTTTTGAGCCCAAGAAGATGATTGAAGGCGTGGCCTACGAGGTCCGAATCTTTGCGGTCAACGCC
ATTGGCATCTCCAAGCCCAGTATGCCCTCCAAGCCCTTTGTTCCTTTGGCTGTGACCAGCCCTCCTACTC
TTCTGGCTGTCGACTCCGTGACTGACTCGTCTGTGACGATGAAGTGGAGGCCCCCAGATCAGATTGGCGC
AGCAGGTTTAGATGGCTATGTGCTAGAGTATTGCTTTGAAGGAACTGAGGACTGGATAGTTGCAAACACA
GACCTGATCGACAAGACCAAGTTCACCATCAATGGTCTGCCCACGGATGCGAAGATCTTTGTACGTGTGA
AGGCTATTAACGCGGCTGGGGCTAGTGAGCCCAAGTACTATTCTCAGCCCATCCTTGTGAAGGAAATCAT
TGAGCCACCAAAGATTCGCATCCCAAGGCATCTGAAGCAAACTTACATCCGCAGAGTCGGAGAAGCTGTC
AATCTGGTGATTCCTTTTCAGGGTAAACCAAGACCAGAGTTGACCTGGAAGAAGGACGGTGAAGAAATTG
ACAAGAATCAAATAAACATTCGCAACTCAGAAACTGATACCATCATATTCATCCGGAAAGCAGAGCGGAG
CCACTCGGGCAAGTACGACCTGCAGGTCAAAGTGGATAAATACGTGGAAAATGCCTCTATCGACATCCAG
ATTGTTGACCGTCCAGGTCCACCCCAGACTGTGACTATTGAAGATGTGTGGGGAGAGAATGTTGCCCTAA
CATGGACACCACCAAAGGACGATGGGAATGCTGCCATCACAGGGTACACCATCCAGAAGGCCGACAAGAA
AAGCATGGAATGGTTCACCGTCATTGAACATTACCACCGAACCAACGCCACCATTACTGAGCTGGTCATA
GGGAACGAGTATTACTTCCGGGTCTTTGCTGAAAACATGTGCGGCCTTAGCGAGGATGCAACTATGACGA
AGGAGAGTGCAGTGATTGCCAAGGACGGTAAGATCTATAAAAATCCAGTGTACGAAGACTTCAATTTCAC
AGAGGCCCCCATGTTTACTCAACCTTTGGTTAACACCTATGCCATCGCTGGTTACAATGCCACCCTGAAC
TGCAGCGTCCGAGGAAATCCCAAGCCCAAAATCACCTGGATGAAAAACAAAGTGGCTATTGTGGATGACC
CAAGATACAGAATGTTCAGCAACCAAGGAGTCTGTACCCTGGAGATCCGCAAGCCTAGTCCTTATGACGG
AGGCACGTACTGCTGCAAAGCAGTCAATGACCTCGGGACGGTGGAGATTGAATGCAAACTGGAGGTGAAA
GTCGTAGCACAGTAA

Translation (1124 aa):
MPEPTKKEENEVSAPAPPPEEPNKEKEAGTAPAKEWSLGESPAGGEEQDKQNANSQLSTLFVEKPQTGSV
KVGANITFVAKVRAEDLLRKPTVKWFKGKWMDLASKAGKHLQLKETFERQTRVYTFEMQIIKAKENYAGN
YRCEVTYKDKFDSCSFDLEVHESTGTTPNIDIRSAFKRSGEGQEDAGELDFSGLLKRREVKQQEEEPEID
VWELLKNANPNEYEKIAFQYGITDLRGMLKRLKRMRRVEKKSAAFAKILDPAYQVDKGGKVRFVVELADP
KLEVKWFKNGQEIRPSTKYIFEHKGNERIMFINNCSLTDDSEYYVTAGDEKCSTELFVREPPIMVTKQLE
DMNAYCGERVEMEVEVSEDDANVKWFKNGEEIFPGPKSRYKIKVEGKKHTLIIEGATKADSAEYSAMTTG
GQSSAKLSVDLRPLKITTPLTDQTVKLGKEVCLKCEISENVPGKWTKNGLPVQEGERLKVVHKGRIHKLV
IANALIEDEGEYVFTPDAYNVPLSAKVHVIDPPKIILDGLDADNTVTVIAGSKLRLEIPVTGEPPPKAIW
SRADKAIMEGSGRIRAESYPDSSTLVIDVAERDDSGVYNINLKNEAGEAHASIKIKVVDIPDPPVAPNVT
EVGDDWCIMNWEPPAYDGGSPILGYFIERKKKQSSRWMRLNFDLCKETTFEPKKMIEGVAYEVRIFAVNA
IGISKPSMPSKPFVPLAVTSPPTLLAVDSVTDSSVTMKWRPPDQIGAAGLDGYVLEYCFEGTEDWIVANT
DLIDKTKFTINGLPTDAKIFVRVKAINAAGASEPKYYSQPILVKEIIEPPKIRIPRHLKQTYIRRVGEAV
NLVIPFQGKPRPELTWKKDGEEIDKNQINIRNSETDTIIFIRKAERSHSGKYDLQVKVDKYVENASIDIQ
IVDRPGPPQTVTIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTNATITELVI
GNEYYFRVFAENMCGLSEDATMTKESAVIAKDGKIYKNPVYEDFNFTEAPMFTQPLVNTYAIAGYNATLN
CSVRGNPKPKITWMKNKVAIVDDPRYRMFSNQGVCTLEIRKPSPYDGGTYCCKAVNDLGTVEIECKLEVK
VVAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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