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Report for CCDS27757.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27757.1 Public Mus musculus 15 Alg10b 23 108 98 CCDS HistoryNCBI Gene:380959Re-query CCDS DB by CCDS ID:27757.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27757.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100309.2 ENSMUSP00000097882.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100309.2Link to Ensembl Protein Viewer:ENSMUSP00000097882.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000100309Re-query CCDS DB by Protein ID:ENSMUSP00000097882
Original member NCBI NM_001033441.3 NP_001028613.1 Updated not alive Link to Nucleotide Sequence:NM_001033441.3Link to Protein Sequence:NP_001028613.1Re-query CCDS DB by Nucleotide ID:NM_001033441Re-query CCDS DB by Protein ID:NP_001028613
Current member NCBI NM_001033441.4 NP_001028613.1 Accepted alive Link to Nucleotide Sequence:NM_001033441.4Link to Protein Sequence:NP_001028613.1Re-query CCDS DB by Nucleotide ID:NM_001033441Re-query CCDS DB by Protein ID:NP_001028613Link to BLAST:NP_001028613.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028613.1 474 Q3UGP8 474 100% 0 0

Chromosomal Locations for CCDS 27757.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 90224438 90224608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90225657 90225854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90227324 90228379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGGCGCAGCTGGAGGGCTATTACTTCTCGGCCGCCTTGAGCTGCACCTTCCTGGTGTCCTGCCTGCTCT
TCTCCGCCTTCAGCCGCGCTCTGCGGGAGCCGTACATGGACGAGATCTTCCACCTGCCGCAGGCGCAGCG
GTACTGCGAGGGCCGCTTCTCCCTGTCGCAGTGGGATCCTATGATCACTACATTACCTGGCCTGTATCTG
GTGTCGGTCGGTGTGGTCAAACCTGCCAGCTGGCTCCTTGGATGGTCTGAGCATGTGATCTGCTCCATTG
GGGTGCTCAGATTTGTCAATCTTCTCTTCAGCGTTGGCAACTTCTACTTGCTGTATTTGCTCTTCAGGAA
GGTGCAACCCAGAAACAAGGCTTCTTCAAGTATCCAGAGAATCTTGTCAACATTAACCCTAGCAGTGTTT
CCAACCCTCTATTTTTTTAACTTCCTTTACTATACAGAAGCTGGGTCTGTATTCTTCACTCTTTTTGCTT
ATTTGATGTGTCTTTATGGCAACCATAGGACCTCGGCCTTGCTTGGATTTTGTGGTTTCATGTTTCGTCA
GACCAACATCATCTGGGCGGCCTTCTGTGCAGGACACCTCATTGCACAGAAGTGCAGTGAAGCCTGGAAG
ATTGAGCTGCAGAAGAAGAAGGAGGAGAGGCTTGCGCCCACGAAGGGACCGCTCTCGGAGCTCAGAAGAG
TGCTGCAGTTTCTGCTGGTGTACGCCATGTCCCTAAAGAACCTGAGAATGCTCTTCCTGTTGACCTGGCC
CTACGTGCTTCTGCTGTTGGCGTTCTTTGCCTTTGTGGTAGTTAATGGTGGCATTGTTGTTGGTGACCGG
AGTAGTCACGAGGCCTGTCTCCATTTTCCTCAGTTGTTCTATTTCTTCTCCTTTACTGCCTTTTTCTCCT
TCCCTCACCTACTTTCTCTGACCAAAGTCAAGACTTTCCTTAGCTTAGTTTGGAAGCGTAGAGTCCAGTT
CTCTGTGGTTACGTTAGTCTCGATACTTTTGGTTTGGAAATTCACTTATGTCCATAAGTATTTACTGGCA
GACAATAGGCATTACACATTTTATGTGTGGAAAAGAGTATTTCAGAGACATGAAGTTGTCAAATATTTAT
TAGTTCCAGCCTACATTTTTGCTGGTTGGGCTATAGCTGACTCTTTAAAGGCTAAGTCAATTTTCTGGAA
TTTAATGTTTTTTGTATGCTTGGTTGCTTCTACAGTTCCTCAGAAACTACTAGAATTCCGTTACTTCATT
CTACCATACATTATTTATAGGCTTAACATACCTCTGCCACCCATATCTAGACTCGTTTGTGAACTGGGTT
GCTATACAGTTGTTAATTTTGTAACTTTTTATATCTTTCTGAACAAGACTTTTCAGTGGCCAAATAGTCA
GGACATCCAAAGGTTTATGTGGTAG

Translation (474 aa):
MAQLEGYYFSAALSCTFLVSCLLFSAFSRALREPYMDEIFHLPQAQRYCEGRFSLSQWDPMITTLPGLYL
VSVGVVKPASWLLGWSEHVICSIGVLRFVNLLFSVGNFYLLYLLFRKVQPRNKASSSIQRILSTLTLAVF
PTLYFFNFLYYTEAGSVFFTLFAYLMCLYGNHRTSALLGFCGFMFRQTNIIWAAFCAGHLIAQKCSEAWK
IELQKKKEERLAPTKGPLSELRRVLQFLLVYAMSLKNLRMLFLLTWPYVLLLLAFFAFVVVNGGIVVGDR
SSHEACLHFPQLFYFFSFTAFFSFPHLLSLTKVKTFLSLVWKRRVQFSVVTLVSILLVWKFTYVHKYLLA
DNRHYTFYVWKRVFQRHEVVKYLLVPAYIFAGWAIADSLKAKSIFWNLMFFVCLVASTVPQKLLEFRYFI
LPYIIYRLNIPLPPISRLVCELGCYTVVNFVTFYIFLNKTFQWPNSQDIQRFMW


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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