CCDS Report for Consensus CDS

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Report for CCDS57373.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
57373.1	Public	Mus musculus	5	Sez6l	23	108	98

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57373.1

Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status
EBI	ENSMUST00000079491.13	ENSMUSP00000078454.7	Accepted	alive
NCBI	NM_001253916.1	NP_001240845.1	Updated	not alive
NCBI	NM_001253916.2	NP_001240845.1	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001240845.1	963	Q6P1D5-1	963	100%	0	0

Chromosomal Locations for CCDS 57373.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)

Genome Browser links:

Chromosome	Start	Stop
5	112422009	112422038
5	112424623	112424725
5	112425614	112425725
5	112426726	112426758
5	112428376	112428570
5	112436283	112436474
5	112438402	112438596
5	112440814	112441010
5	112461147	112461285
5	112462855	112463049
5	112464573	112464739
5	112465946	112466111
5	112471597	112471782
5	112472731	112472923
5	112473418	112473551
5	112475029	112475586
5	112576772	112576868

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2892 nt):
ATGCCCGTGGCACGGCCACAAGCCGCGGGACCCGACAGGATCTCTCTGTTCCTTGTCGCCTTCCTTCTGG GGAGCCCCGCGGCAGCTCAGGCGGAAGATGGTGGTCCAGAGGGAGAGATGCACCCTTCCACTGCCTACCT CCTGCCCTCTGCCTCGCTGGAGAGTAGCCTGGAAGAGGGGGTGACATCAGCAGCCCCAGGTCTCCTGCCA TCCCAAGAAGCACTGGAAGCAATGGAAGAGTCCTTGCCCCCTGCGCTGCCCGACGAGGCCAGTGTCCAGC ACACGCCTGCCCTAAGGAAGGGTCTGCCGTCCCTGAAGCAACTCAACTCGGCCCGGAGGCAGCTGAGGCC CCTGGCTACCCCGACAACTCTGCAGAGACTGGGGTCTCCTGCCTCTGCCACCACGAAGCTGCGTGAGCCT GAAGACCCCGAGCAGCCCACGGCGCCTGCGCCACTGCAGATCGCGCCCTTCACTGCACTGGCGACCACAC TCCCACACAGCCCTCAGCCCGCTCAGGCCCCTGATGACAGCAGCCCCGGTAGCCCGCTGGACAAGGGGGA CAATGAGCTGACCGGGTCTGCCTCCGAGGAGAGCCAGGAGACCACCACGTCCACCATCGTCACTACCACC ATCATCACCACGGAGCAGGCCCCAGCTCTCTGCGGTGTGAGCTTCTCCGACCCGGAGGGATACATTGACT CAAGTGATTTCCCTCCACAACCCTACAGCAGCTTCCTGGAATGCACTTACAATGTGACGGTCTACACTGG CTACGGGGTGGAACTGCAGGTCAAGAGTGTCAACCTCTCCGAGGGGGAGCTGCTCTCCATCCGAGGAGTG GACGGTCCCACTCTGACAGTCCTGGCCAACCAGACTCTACTGGTAGAGGGCCAGGTGATCCGCAGCCCCA CCAACACCATCTCTGTCTACTTCCGGACCTTCCAGGATGATGGCCTCGGGACCTTCCAGCTACATTACCA GGCCTTCATGCTGAGCTGCCCCTTTCCCCGGAGGCCCGATGCCGGAGAGGTCACGGTGATGGATCTGCAC TCGGGCGGGGTGGCCCACTTCCATTGCCACCTGGGCTACGAGCTGCAGGGAGCCAAGACGCTGACCTGCA TCAATGCCTCCAAACCGCACTGGAGCAGCCAGGAGCCTGTCTGCTCAGCCCCATGTGGAGGAGCAGTGCA CAATGCCACCATCGGCCGAGTTCTCTCCCCCAGTTTCCCGGGAACCGCCAATGGCAGCCAGCTCTGCGTG TGGACCATAGAGGCTCCAGAGGGTCAGAAGCTTCACCTGCACCTTGAAAGGCTGCTGCTGCATGAGAAAG ACAGGATGATTGTCTACAGTGGAAGAACAAACACATCTGCCCTCCTGTACGACTCTCTCAGAACAGAGAG CGTGCCCTTCGAAGGCCTGCTGAGCGAGGGTAGCAGTATCCGCATTGAGTTCACGTCGGACCAGGGCCAG GCAGCTTCCGCCTTCAACATCCGCTTTGAGGCCTTTGAGAAAGGTCACTGCTATGAACCCTACATCCAAA ATGGGAATTTCACCACATCGGACCCCACCTACAACATCGGCACCATTGTGGAGTTCACCTGCGACCCCGG CCACTCTCTGGAACAGGGCCCGGCTGTCATCGAGTGTGTCAATGTGCGTGACCCATACTGGAATGACACA GAGCCTCTATGCAGAGCCATGTGTGGTGGGGAGCTCTCTGCTGTGGCTGGGGTGGTGCTGTCTCCAAACT GGCCAGAGCCCTATGCAGAAGGTGAAGACTGTGTGTGGAAGATCCACGTTGGGGAGGAGAAGCGGATCTT CCTGGACATTCAGTTCCTTAACCTGAGCAACAGCGACATCCTGACCATCTATGATGGCGATGAGGTTGTG CCCCACGTCCTGGGCCAGTACTTTGGCCACAGCAGCCCTCAGAAGCTGTACTCCTCCACACCGGACCTCA CCATCCAGTTCCACTCCGACCCTGCAGGCCTCATCTTTGGCAAGGGCCAGGGATTTATCATGAACTATAT AGAGGTGTCACGGAACGACTCCTGCTCAGACTTGCCTGAAATTCAGAACGGCTGGAAAACTACTTCCCAC ACAGAGCTGGTCAGGGGAGCCCGGATCACATACCAGTGTGACCCAGGCTATGACATTGTGGGGAGTGACA CCCTCACCTGCCAATGGGACCTCAGTTGGAGCAGCGACCCGCCGTTTTGTGAAAAAATTATGTACTGTAC TGACCCCGGGGAGGTGGAGCACTCCACCCGCCTCATTTCAGACCCTGTGCTGCTAGTGGGCACCACCATC CAGTACACCTGTAGCCCTGGCTTTGTGCTTGAAGGGAGCTCTCTTCTCACCTGCTACAGCCGCGAGACAG GAACTCCCATCTGGACATCTCGCCTGCCCCACTGTGTCTCTGAGGAGTCCCTGGCGTGTGACAACCCAGG ACTGCCTGAGAACGGGTACCAGATCCTGTACAAGCGGCTGTACCTGCCCGGAGAGTCCCTCACCTTCATG TGCTACGAGGGCTTTGAGCTCATGGGCGAAGTGACCATCCGGTGCATTCTGGGACAGCCGTCCCATTGGA GTGGGCCCCTGCCCATCTGTAAAGTTAACCAAGACAGTTTTGAACATGCATTGGAAGCAGAAGCGGCAGC AGAGTCCTCACTGGAAGGTGGGAACATGGCGCTGGCCATCTTCATTCCGGTCCTTCTCATCTCCTTGCTA CTGGGAGGAGCCTACATCTACGTCACGAGGTGCCGACAATACTCCAGCCTCCGCCTACCCCTCATGTACT CCCACCCCTACAGTCAGATCACCGTGGAGACTGAGTTCGACAATCCCATCTACGAGACTGGGGAAACAAG AGAGTATGAAGTTTCCATCTAA
Translation (963 aa):
MPVARPQAAGPDRISLFLVAFLLGSPAAAQAEDGGPEGEMHPSTAYLLPSASLESSLEEGVTSAAPGLLP SQEALEAMEESLPPALPDEASVQHTPALRKGLPSLKQLNSARRQLRPLATPTTLQRLGSPASATTKLREP EDPEQPTAPAPLQIAPFTALATTLPHSPQPAQAPDDSSPGSPLDKGDNELTGSASEESQETTTSTIVTTT IITTEQAPALCGVSFSDPEGYIDSSDFPPQPYSSFLECTYNVTVYTGYGVELQVKSVNLSEGELLSIRGV DGPTLTVLANQTLLVEGQVIRSPTNTISVYFRTFQDDGLGTFQLHYQAFMLSCPFPRRPDAGEVTVMDLH SGGVAHFHCHLGYELQGAKTLTCINASKPHWSSQEPVCSAPCGGAVHNATIGRVLSPSFPGTANGSQLCV WTIEAPEGQKLHLHLERLLLHEKDRMIVYSGRTNTSALLYDSLRTESVPFEGLLSEGSSIRIEFTSDQGQ AASAFNIRFEAFEKGHCYEPYIQNGNFTTSDPTYNIGTIVEFTCDPGHSLEQGPAVIECVNVRDPYWNDT EPLCRAMCGGELSAVAGVVLSPNWPEPYAEGEDCVWKIHVGEEKRIFLDIQFLNLSNSDILTIYDGDEVV PHVLGQYFGHSSPQKLYSSTPDLTIQFHSDPAGLIFGKGQGFIMNYIEVSRNDSCSDLPEIQNGWKTTSH TELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFCEKIMYCTDPGEVEHSTRLISDPVLLVGTTI QYTCSPGFVLEGSSLLTCYSRETGTPIWTSRLPHCVSEESLACDNPGLPENGYQILYKRLYLPGESLTFM CYEGFELMGEVTIRCILGQPSHWSGPLPICKVNQDSFEHALEAEAAAESSLEGGNMALAIFIPVLLISLL LGGAYIYVTRCRQYSSLRLPLMYSHPYSQITVETEFDNPIYETGETREYEVSI

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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